Wall clock time and date at job start Sun Mar 29 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 H 1.08999 * 109.46791 * 57.39335 * 3 2 1 5 5 C 1.53001 * 109.47314 * 297.39270 * 3 2 1 6 6 N 1.46905 * 109.46803 * 177.38908 * 3 2 1 7 7 C 1.46850 * 110.99631 * 182.11355 * 6 3 2 8 8 C 1.53035 * 109.52384 * 185.84232 * 7 6 3 9 9 C 1.53122 * 109.27806 * 300.82140 * 8 7 6 10 10 C 1.50697 * 109.52632 * 177.55854 * 9 8 7 11 11 H 1.08002 * 119.99930 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00353 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00296 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47194 * 89.99750 * 14 12 10 16 16 H 1.48502 * 109.46947 * 209.99970 * 14 12 10 17 17 H 1.48503 * 109.46815 * 329.99818 * 14 12 10 18 18 C 1.53121 * 109.15999 * 57.64881 * 9 8 7 19 19 C 1.46838 * 111.00391 * 306.31942 * 6 3 2 20 20 H 1.09005 * 109.47039 * 186.04431 * 1 2 3 21 21 H 1.08997 * 109.47367 * 306.04701 * 1 2 3 22 22 H 1.09001 * 109.46999 * 66.04716 * 1 2 3 23 23 H 1.09007 * 109.47264 * 240.00687 * 2 1 3 24 24 H 1.08998 * 109.46899 * 120.00108 * 2 1 3 25 25 H 1.08997 * 109.46724 * 299.99788 * 5 3 2 26 26 H 1.08999 * 109.47107 * 60.00211 * 5 3 2 27 27 H 1.09006 * 109.46756 * 180.02562 * 5 3 2 28 28 H 1.09000 * 109.46749 * 65.82507 * 7 6 3 29 29 H 1.09004 * 109.45101 * 305.85144 * 7 6 3 30 30 H 1.08994 * 109.50732 * 180.87280 * 8 7 6 31 31 H 1.09006 * 109.50265 * 60.75842 * 8 7 6 32 32 H 1.09001 * 109.51918 * 297.75024 * 9 8 7 33 33 H 0.97002 * 119.99830 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.49966 * 62.29463 * 18 9 8 35 35 H 1.09001 * 109.49919 * 182.40430 * 18 9 8 36 36 H 1.09000 * 109.46646 * 294.17900 * 19 6 3 37 37 H 1.09004 * 109.46356 * 54.14283 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6389 1.9696 0.8657 5 6 1.5842 2.1446 -1.2807 6 7 3.5077 1.4430 0.0631 7 6 4.0317 2.8138 0.1154 8 6 5.5594 2.7808 0.0334 9 6 6.1108 1.9588 1.2016 10 6 7.6114 1.8724 1.0928 11 1 8.1220 2.3548 0.2725 12 6 8.3325 1.1775 2.0404 13 7 7.7108 0.5904 3.0396 14 14 10.1926 1.0710 1.9059 15 1 10.8075 2.2101 2.6334 16 1 10.6595 -0.2068 2.5015 17 1 10.5893 1.1248 0.4759 18 6 5.5121 0.5504 1.1518 19 6 3.9858 0.6481 1.2014 20 1 -0.3633 -1.0220 0.1082 21 1 -0.3634 0.6047 0.8309 22 1 -0.3633 0.4172 -0.9392 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 1.9853 1.6175 -2.1464 26 1 0.4953 2.1443 -1.3275 27 1 1.9480 3.1722 -1.2809 28 1 3.7283 3.2832 1.0512 29 1 3.6352 3.3862 -0.7233 30 1 5.9489 3.7974 0.0878 31 1 5.8635 2.3241 -0.9085 32 1 5.8398 2.4366 2.1431 33 1 8.2181 0.1018 3.7066 34 1 5.8155 0.0585 0.2277 35 1 5.8679 -0.0266 2.0055 36 1 3.6826 1.1276 2.1321 37 1 3.5560 -0.3524 1.1518 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259121479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:52 Heat of formation + Delta-G solvation = -18.855526 kcal Electronic energy + Delta-G solvation = -14774.334247 eV Core-core repulsion = 12550.629595 eV Total energy + Delta-G solvation = -2223.704652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.70262 -35.38292 -32.80255 -30.71431 -30.13325 -28.27319 -25.62009 -24.00271 -21.91947 -21.47355 -19.52627 -18.55640 -16.44221 -15.61845 -14.87868 -14.51011 -14.16104 -13.51582 -13.03292 -12.94572 -12.60870 -12.32084 -12.22387 -12.21793 -11.46923 -11.32969 -11.11150 -10.86334 -10.69472 -10.54607 -10.35361 -10.22595 -10.12042 -9.89056 -9.34475 -8.85637 -8.61779 -8.24355 -7.63461 -5.92776 -3.97884 3.34062 3.40623 3.44460 4.43345 4.49372 5.04713 5.11140 5.37291 5.44148 5.55062 5.65013 5.70169 5.74690 5.95452 6.01069 6.08972 6.13626 6.18832 6.21407 6.27482 6.38168 6.46535 6.54484 6.70904 6.72122 6.93352 7.15618 7.24767 7.51982 7.70531 7.81317 7.91316 8.11346 8.22197 8.53846 9.05910 9.66200 11.13446 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059547 B = 0.007213 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.100605 B = 3880.958862 C = 4185.439876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.078 3.922 4 H 0.030 0.970 5 C -0.144 4.144 6 N -0.532 5.532 7 C 0.058 3.942 8 C -0.106 4.106 9 C 0.047 3.953 10 C -0.509 4.509 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.103 4.103 19 C 0.053 3.947 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.259 0.741 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 0.442 -5.070 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.030 4.030 4 H 0.048 0.952 5 C -0.201 4.201 6 N -0.257 5.257 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.142 4.142 19 C -0.074 4.074 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.037 0.963 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.341 0.118 -5.337 12.534 hybrid contribution 0.716 0.301 0.802 1.116 sum -10.625 0.419 -4.535 11.560 Atomic orbital electron populations 1.21801 0.96171 1.01231 1.01526 1.21668 0.94914 0.96512 1.02826 1.21610 0.88958 0.95687 0.96793 0.95170 1.21898 0.99938 1.00359 0.97928 1.62042 1.06321 1.13173 1.44165 1.22160 0.97555 0.88672 0.98588 1.21673 0.91620 0.99789 1.01298 1.18687 0.94517 0.91491 0.92436 1.21222 0.91701 1.32322 1.09471 0.92795 1.24970 0.98181 0.95570 0.95340 1.69884 1.35065 1.35040 1.13235 0.86636 0.86118 0.77297 0.78184 1.20835 1.21320 1.19962 1.21649 0.89219 1.01155 1.02137 1.22347 0.99236 0.96076 0.89749 0.92957 0.93091 0.92699 0.91276 0.91542 0.92012 0.92743 0.92789 0.96126 0.92165 0.93353 0.92550 0.96266 0.93158 0.93901 0.89090 0.96261 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.45 37.16 0.35 -1.26 16 2 C -0.12 -1.64 5.09 -26.73 -0.14 -1.77 16 3 C 0.08 1.18 2.18 -67.71 -0.15 1.03 16 4 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.14 -1.86 8.74 37.16 0.32 -1.53 16 6 N -0.53 -9.82 4.52 -226.69 -1.03 -10.84 16 7 C 0.06 1.09 5.25 -3.83 -0.02 1.07 16 8 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -25.84 11.38 55.43 0.63 -25.21 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 19 C 0.05 1.08 5.09 -3.84 -0.02 1.06 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.54 6.81 -51.93 -0.35 0.19 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.95 6.04 -51.93 -0.31 0.63 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.59 6.63 -51.93 -0.34 0.25 16 27 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.00 6.07 -51.93 -0.32 0.69 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 2.44 6.18 -51.93 -0.32 2.12 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 1.13 5.81 -51.93 -0.30 0.83 16 LS Contribution 278.52 15.07 4.20 4.20 Total: -1.00 -28.37 278.52 -8.20 -36.57 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.47 Total: -2.83 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.51 Total: -18.45 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.40 Total: -36.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.37 -8.20 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259121479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.712 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds