Wall clock time and date at job start Sun Mar 29 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 H 1.08999 * 109.46791 * 57.39335 * 3 2 1 5 5 C 1.53001 * 109.47314 * 297.39270 * 3 2 1 6 6 N 1.46905 * 109.46803 * 177.38908 * 3 2 1 7 7 C 1.46850 * 110.99631 * 182.11355 * 6 3 2 8 8 C 1.53035 * 109.52384 * 185.84232 * 7 6 3 9 9 C 1.53122 * 109.27806 * 300.82140 * 8 7 6 10 10 C 1.50697 * 109.52632 * 177.55854 * 9 8 7 11 11 H 1.08002 * 119.99930 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00353 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00296 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47194 * 89.99750 * 14 12 10 16 16 H 1.48502 * 109.46947 * 209.99970 * 14 12 10 17 17 H 1.48503 * 109.46815 * 329.99818 * 14 12 10 18 18 C 1.53121 * 109.15999 * 57.64881 * 9 8 7 19 19 C 1.46838 * 111.00391 * 306.31942 * 6 3 2 20 20 H 1.09005 * 109.47039 * 186.04431 * 1 2 3 21 21 H 1.08997 * 109.47367 * 306.04701 * 1 2 3 22 22 H 1.09001 * 109.46999 * 66.04716 * 1 2 3 23 23 H 1.09007 * 109.47264 * 240.00687 * 2 1 3 24 24 H 1.08998 * 109.46899 * 120.00108 * 2 1 3 25 25 H 1.08997 * 109.46724 * 299.99788 * 5 3 2 26 26 H 1.08999 * 109.47107 * 60.00211 * 5 3 2 27 27 H 1.09006 * 109.46756 * 180.02562 * 5 3 2 28 28 H 1.09000 * 109.46749 * 65.82507 * 7 6 3 29 29 H 1.09004 * 109.45101 * 305.85144 * 7 6 3 30 30 H 1.08994 * 109.50732 * 180.87280 * 8 7 6 31 31 H 1.09006 * 109.50265 * 60.75842 * 8 7 6 32 32 H 1.09001 * 109.51918 * 297.75024 * 9 8 7 33 33 H 0.97002 * 119.99830 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.49966 * 62.29463 * 18 9 8 35 35 H 1.09001 * 109.49919 * 182.40430 * 18 9 8 36 36 H 1.09000 * 109.46646 * 294.17900 * 19 6 3 37 37 H 1.09004 * 109.46356 * 54.14283 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6389 1.9696 0.8657 5 6 1.5842 2.1446 -1.2807 6 7 3.5077 1.4430 0.0631 7 6 4.0317 2.8138 0.1154 8 6 5.5594 2.7808 0.0334 9 6 6.1108 1.9588 1.2016 10 6 7.6114 1.8724 1.0928 11 1 8.1220 2.3548 0.2725 12 6 8.3325 1.1775 2.0404 13 7 7.7108 0.5904 3.0396 14 14 10.1926 1.0710 1.9059 15 1 10.8075 2.2101 2.6334 16 1 10.6595 -0.2068 2.5015 17 1 10.5893 1.1248 0.4759 18 6 5.5121 0.5504 1.1518 19 6 3.9858 0.6481 1.2014 20 1 -0.3633 -1.0220 0.1082 21 1 -0.3634 0.6047 0.8309 22 1 -0.3633 0.4172 -0.9392 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 1.9853 1.6175 -2.1464 26 1 0.4953 2.1443 -1.3275 27 1 1.9480 3.1722 -1.2809 28 1 3.7283 3.2832 1.0512 29 1 3.6352 3.3862 -0.7233 30 1 5.9489 3.7974 0.0878 31 1 5.8635 2.3241 -0.9085 32 1 5.8398 2.4366 2.1431 33 1 8.2181 0.1018 3.7066 34 1 5.8155 0.0585 0.2277 35 1 5.8679 -0.0266 2.0055 36 1 3.6826 1.1276 2.1321 37 1 3.5560 -0.3524 1.1518 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259121479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:52 Heat of formation + Delta-G solvation = -35.441181 kcal Electronic energy + Delta-G solvation = -14775.053455 eV Core-core repulsion = 12550.629595 eV Total energy + Delta-G solvation = -2224.423860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21545 -36.94256 -34.59781 -32.35541 -31.77736 -29.58802 -27.45619 -25.33362 -23.66196 -23.05885 -20.77877 -20.37779 -18.47836 -17.18941 -16.46608 -16.00491 -15.67539 -14.94213 -14.62297 -14.58379 -14.25719 -13.92259 -13.62114 -13.44485 -12.87677 -12.74581 -12.58977 -12.44329 -12.32940 -12.19230 -11.94864 -11.84469 -11.53498 -11.50514 -11.24797 -10.74671 -10.55236 -10.36468 -9.13909 -8.07829 -6.21524 1.41038 1.41684 1.52361 2.44002 3.03543 3.18962 3.93051 4.03044 4.19374 4.33584 4.41451 4.43800 4.55588 4.58764 4.70040 4.75807 4.77177 4.90047 4.93862 5.01985 5.06691 5.16017 5.19930 5.23780 5.25148 5.34941 5.46802 5.50228 5.58294 5.63929 6.00687 6.04553 6.33839 6.40362 6.42678 6.90120 7.46242 8.96932 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059547 B = 0.007213 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.100605 B = 3880.958862 C = 4185.439876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.074 3.926 4 H 0.028 0.972 5 C -0.138 4.138 6 N -0.538 5.538 7 C 0.064 3.936 8 C -0.099 4.099 9 C 0.043 3.957 10 C -0.533 4.533 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.919 5.919 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.094 4.094 19 C 0.065 3.935 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.051 0.949 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.008 0.992 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 0.651 -6.271 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.034 4.034 4 H 0.046 0.954 5 C -0.196 4.196 6 N -0.263 5.263 7 C -0.064 4.064 8 C -0.137 4.137 9 C 0.024 3.976 10 C -0.571 4.571 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.559 5.559 14 Si 0.781 3.219 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.132 4.132 19 C -0.062 4.062 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.420 0.334 -6.548 14.045 hybrid contribution 1.032 0.239 1.187 1.591 sum -11.389 0.573 -5.361 12.600 Atomic orbital electron populations 1.21755 0.93762 1.02215 1.02371 1.21653 0.96989 0.95133 1.02006 1.21790 0.86345 0.97175 0.98040 0.95396 1.21870 1.01581 0.99849 0.96250 1.62028 1.08917 1.12633 1.42719 1.22094 0.95355 0.89363 0.99581 1.21544 0.93954 0.99122 0.99096 1.18672 0.93900 0.92609 0.92396 1.21588 0.93281 1.32622 1.09628 0.93084 1.25766 1.02837 0.95154 0.94980 1.70026 1.36717 1.35388 1.13765 0.85603 0.80495 0.77441 0.78396 1.20159 1.20833 1.19308 1.21410 0.92176 0.99708 0.99943 1.22104 0.96407 0.97521 0.90200 0.91878 0.92834 0.91343 0.91597 0.92860 0.92219 0.90195 0.92734 0.96705 0.89119 0.92925 0.93005 0.99682 0.93093 0.95115 0.92185 0.97424 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.45 71.98 0.68 -1.96 16 2 C -0.12 -2.98 5.09 30.60 0.16 -2.82 16 3 C 0.07 2.08 2.18 44.92 0.10 2.18 16 4 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 5 C -0.14 -3.11 8.74 71.98 0.63 -2.49 16 6 N -0.54 -19.24 4.52 -871.12 -3.94 -23.18 16 7 C 0.06 2.32 5.25 86.32 0.45 2.77 16 8 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 9 C 0.04 2.25 2.16 -11.46 -0.02 2.22 16 10 C -0.53 -30.51 8.56 25.60 0.22 -30.29 16 11 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 12 C 0.01 0.62 5.31 84.65 0.45 1.06 16 13 N -0.92 -54.53 11.38 21.45 0.24 -54.28 16 14 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.09 -4.69 5.12 30.64 0.16 -4.53 16 19 C 0.07 2.67 5.09 86.32 0.44 3.10 16 20 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 1.09 6.81 -2.39 -0.02 1.07 16 23 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.05 1.45 6.04 -2.39 -0.01 1.43 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.41 6.63 -2.39 -0.02 1.40 16 27 H 0.05 1.22 6.32 -2.38 -0.02 1.21 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 2.78 6.07 -2.38 -0.01 2.76 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 32 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 3.35 6.18 -2.39 -0.01 3.34 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.08 2.89 5.81 -2.38 -0.01 2.88 16 Total: -1.00 -61.50 278.52 2.76 -58.75 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.01 Total: 6.93 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 3.42 Total: -34.90 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.70 Total: -77.46 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -61.50 2.76 -58.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259121479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.306 kcal (2) G-P(sol) polarization free energy of solvation -61.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds