Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 6 6 N 1.46904 * 109.47449 * 295.00426 * 3 2 1 7 7 C 1.46848 * 110.99749 * 299.20905 * 6 3 2 8 8 C 1.53032 * 109.52705 * 174.15788 * 7 6 3 9 9 C 1.53123 * 109.27821 * 59.17546 * 8 7 6 10 10 C 1.50697 * 109.52323 * 182.44190 * 9 8 7 11 11 H 1.08006 * 119.99815 * 119.68860 * 10 9 8 12 12 C 1.37878 * 119.99962 * 299.68644 * 10 9 8 13 13 N 1.31505 * 120.00207 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99631 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47236 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47040 * 120.00186 * 14 12 10 17 17 H 1.48508 * 109.47091 * 239.99944 * 14 12 10 18 18 C 1.53119 * 109.16225 * 302.35157 * 9 8 7 19 19 C 1.46845 * 111.00367 * 174.99753 * 6 3 2 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09008 * 109.46970 * 60.00049 * 5 3 2 26 26 H 1.08996 * 109.47654 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.47476 * 300.00087 * 5 3 2 28 28 H 1.08997 * 109.46489 * 294.17919 * 7 6 3 29 29 H 1.09012 * 109.46334 * 54.14193 * 7 6 3 30 30 H 1.09008 * 109.50427 * 299.23997 * 8 7 6 31 31 H 1.08996 * 109.50619 * 179.12234 * 8 7 6 32 32 H 1.09000 * 109.51479 * 62.25400 * 9 8 7 33 33 H 0.97002 * 120.00184 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.50241 * 297.71272 * 18 9 8 35 35 H 1.08998 * 109.50265 * 177.59474 * 18 9 8 36 36 H 1.08999 * 109.46430 * 305.85365 * 19 6 3 37 37 H 1.09003 * 109.45960 * 65.82506 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 1.6513 2.0994 -1.2552 7 6 2.2354 1.4099 -2.4127 8 6 1.6947 2.0293 -3.7034 9 6 2.0523 3.5178 -3.7384 10 6 1.4708 4.1464 -4.9784 11 1 0.7592 4.9543 -4.8914 12 6 1.8472 3.6904 -6.2239 13 7 2.7133 2.7065 -6.3298 14 14 1.1270 4.4702 -7.7610 15 1 0.1826 5.5486 -7.3729 16 1 2.2216 5.0429 -8.5849 17 1 0.4036 3.4386 -8.5470 18 6 1.4733 4.2030 -2.4975 19 6 2.0205 3.5206 -1.2418 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.9994 0.9054 -0.7162 26 1 3.9281 2.4720 0.1253 27 1 3.8532 0.9571 1.0571 28 1 3.3202 1.5127 -2.3873 29 1 1.9700 0.3532 -2.3780 30 1 0.6111 1.9145 -3.7361 31 1 2.1403 1.5276 -4.5624 32 1 3.1363 3.6317 -3.7450 33 1 2.9779 2.3854 -7.2061 34 1 0.3864 4.1224 -2.5111 35 1 1.7608 5.2544 -2.4949 36 1 1.5990 3.9970 -0.3566 37 1 3.1064 3.6135 -1.2218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259121481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = -19.526629 kcal Electronic energy + Delta-G solvation = -14958.603936 eV Core-core repulsion = 12734.870184 eV Total energy + Delta-G solvation = -2223.733753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.87206 -35.19917 -32.60979 -30.67660 -29.76446 -28.75408 -25.49106 -23.53555 -22.34928 -21.72725 -19.58219 -18.17929 -16.35861 -15.68637 -14.50501 -14.30448 -14.00603 -13.57000 -13.45428 -13.09960 -12.76373 -12.24567 -12.05883 -11.69165 -11.52079 -11.34131 -10.98559 -10.89541 -10.70772 -10.55151 -10.39057 -10.24741 -10.05965 -9.82987 -9.34612 -8.89067 -8.61657 -8.24859 -7.57637 -5.93155 -3.98149 3.32693 3.40696 3.45029 4.47884 4.52482 5.02317 5.30925 5.37254 5.44122 5.61190 5.69834 5.79834 5.87297 5.95797 6.06051 6.10406 6.14678 6.23355 6.30394 6.36432 6.43660 6.52836 6.65435 6.71498 6.75635 6.93940 7.15620 7.25466 7.52479 7.71029 7.81889 7.91725 8.11412 8.22534 8.53842 9.05921 9.66011 11.12968 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.007804 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.124215 B = 3586.825269 C = 3679.566288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.078 3.922 4 H 0.073 0.927 5 C -0.187 4.187 6 N -0.525 5.525 7 C 0.052 3.948 8 C -0.104 4.104 9 C 0.048 3.952 10 C -0.509 4.509 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.106 4.106 19 C 0.059 3.941 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -3.775 11.040 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.091 0.909 5 C -0.245 4.245 6 N -0.250 5.250 7 C -0.075 4.075 8 C -0.142 4.142 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.144 4.144 19 C -0.069 4.069 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.183 -3.900 10.854 11.593 hybrid contribution 0.636 0.419 -0.788 1.095 sum -0.547 -3.481 10.066 10.665 Atomic orbital electron populations 1.21646 0.95393 1.00352 1.02603 1.21607 0.96743 0.95701 1.01336 1.21729 0.92647 0.95256 0.93510 0.90914 1.22475 0.98500 1.01927 1.01642 1.62202 1.59111 1.02273 1.01403 1.22335 0.96136 0.97244 0.91767 1.21651 0.99324 0.99010 0.94205 1.18678 0.95608 0.91624 0.91143 1.21270 1.25081 1.17626 0.90727 0.92759 1.24968 0.95082 0.95101 0.98914 1.69889 1.32886 1.26969 1.23410 0.86595 0.78976 0.79310 0.83454 1.19852 1.21174 1.21107 1.21672 1.00399 0.97781 0.94533 1.22108 0.97436 0.88323 0.98995 0.93928 0.93550 0.91090 0.92622 0.91659 0.92227 0.92630 0.92928 0.95822 0.92378 0.93981 0.89158 0.96280 0.93226 0.92595 0.93402 0.92738 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.80 37.16 0.36 -1.50 16 2 C -0.12 -1.54 5.22 -26.73 -0.14 -1.68 16 3 C 0.08 1.14 2.35 -67.71 -0.16 0.98 16 4 H 0.07 1.02 8.08 -51.92 -0.42 0.60 16 5 C -0.19 -2.58 8.50 37.15 0.32 -2.27 16 6 N -0.53 -9.39 4.10 -226.69 -0.93 -10.32 16 7 C 0.05 1.04 4.64 -3.84 -0.02 1.02 16 8 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 11 H 0.05 1.51 7.75 -52.48 -0.41 1.10 16 12 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 13 N -0.89 -25.70 11.37 55.43 0.63 -25.07 16 14 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 19 C 0.06 1.09 5.02 -3.84 -0.02 1.07 16 20 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.93 6.05 -51.93 -0.31 0.61 16 25 H 0.06 0.88 6.52 -51.92 -0.34 0.55 16 26 H 0.05 0.79 6.65 -51.93 -0.35 0.45 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.02 0.48 6.62 -51.93 -0.34 0.14 16 29 H 0.06 1.07 5.93 -51.92 -0.31 0.77 16 30 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -27.93 278.12 -8.13 -36.06 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.48 Total: -2.08 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.52 Total: -19.31 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.30 Total: -35.38 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.93 -8.13 -36.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259121481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.537 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds