Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 6 6 N 1.46904 * 109.47449 * 295.00426 * 3 2 1 7 7 C 1.46848 * 110.99749 * 299.20905 * 6 3 2 8 8 C 1.53032 * 109.52705 * 174.15788 * 7 6 3 9 9 C 1.53123 * 109.27821 * 59.17546 * 8 7 6 10 10 C 1.50697 * 109.52323 * 182.44190 * 9 8 7 11 11 H 1.08006 * 119.99815 * 119.68860 * 10 9 8 12 12 C 1.37878 * 119.99962 * 299.68644 * 10 9 8 13 13 N 1.31505 * 120.00207 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99631 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47236 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47040 * 120.00186 * 14 12 10 17 17 H 1.48508 * 109.47091 * 239.99944 * 14 12 10 18 18 C 1.53119 * 109.16225 * 302.35157 * 9 8 7 19 19 C 1.46845 * 111.00367 * 174.99753 * 6 3 2 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09008 * 109.46970 * 60.00049 * 5 3 2 26 26 H 1.08996 * 109.47654 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.47476 * 300.00087 * 5 3 2 28 28 H 1.08997 * 109.46489 * 294.17919 * 7 6 3 29 29 H 1.09012 * 109.46334 * 54.14193 * 7 6 3 30 30 H 1.09008 * 109.50427 * 299.23997 * 8 7 6 31 31 H 1.08996 * 109.50619 * 179.12234 * 8 7 6 32 32 H 1.09000 * 109.51479 * 62.25400 * 9 8 7 33 33 H 0.97002 * 120.00184 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.50241 * 297.71272 * 18 9 8 35 35 H 1.08998 * 109.50265 * 177.59474 * 18 9 8 36 36 H 1.08999 * 109.46430 * 305.85365 * 19 6 3 37 37 H 1.09003 * 109.45960 * 65.82506 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 1.6513 2.0994 -1.2552 7 6 2.2354 1.4099 -2.4127 8 6 1.6947 2.0293 -3.7034 9 6 2.0523 3.5178 -3.7384 10 6 1.4708 4.1464 -4.9784 11 1 0.7592 4.9543 -4.8914 12 6 1.8472 3.6904 -6.2239 13 7 2.7133 2.7065 -6.3298 14 14 1.1270 4.4702 -7.7610 15 1 0.1826 5.5486 -7.3729 16 1 2.2216 5.0429 -8.5849 17 1 0.4036 3.4386 -8.5470 18 6 1.4733 4.2030 -2.4975 19 6 2.0205 3.5206 -1.2418 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.9994 0.9054 -0.7162 26 1 3.9281 2.4720 0.1253 27 1 3.8532 0.9571 1.0571 28 1 3.3202 1.5127 -2.3873 29 1 1.9700 0.3532 -2.3780 30 1 0.6111 1.9145 -3.7361 31 1 2.1403 1.5276 -4.5624 32 1 3.1363 3.6317 -3.7450 33 1 2.9779 2.3854 -7.2061 34 1 0.3864 4.1224 -2.5111 35 1 1.7608 5.2544 -2.4949 36 1 1.5990 3.9970 -0.3566 37 1 3.1064 3.6135 -1.2218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259121481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = -35.451590 kcal Electronic energy + Delta-G solvation = -14959.294495 eV Core-core repulsion = 12734.870184 eV Total energy + Delta-G solvation = -2224.424311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34850 -36.82978 -34.41654 -32.21900 -31.45229 -30.10577 -27.38049 -24.82245 -24.01691 -23.32659 -21.06479 -19.81462 -18.43963 -17.14757 -16.45870 -15.73172 -15.37166 -14.95685 -14.84174 -14.64210 -14.40431 -13.88413 -13.69326 -13.07488 -12.99087 -12.82758 -12.67561 -12.48916 -12.29602 -12.08030 -11.94544 -11.79493 -11.53135 -11.39150 -11.24065 -10.77216 -10.57504 -10.35566 -9.01981 -8.07579 -6.20996 1.39386 1.41138 1.52726 2.43789 3.12160 3.19380 3.90513 4.16531 4.23575 4.32721 4.39869 4.47879 4.57802 4.62506 4.71338 4.78756 4.85442 4.88491 4.95877 5.02710 5.08627 5.14725 5.21688 5.26313 5.31596 5.38678 5.46860 5.59221 5.61120 5.67029 6.02782 6.07400 6.37834 6.42386 6.46726 6.91113 7.46678 8.97033 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.007804 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.124215 B = 3586.825269 C = 3679.566288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.089 0.911 5 C -0.182 4.182 6 N -0.530 5.530 7 C 0.068 3.932 8 C -0.094 4.094 9 C 0.045 3.955 10 C -0.533 4.533 11 H 0.050 0.950 12 C 0.011 3.989 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.099 4.099 19 C 0.065 3.935 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.028 0.972 31 H 0.058 0.942 32 H -0.014 1.014 33 H 0.260 0.740 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 -3.958 12.585 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.032 4.032 4 H 0.107 0.893 5 C -0.241 4.241 6 N -0.255 5.255 7 C -0.060 4.060 8 C -0.133 4.133 9 C 0.026 3.974 10 C -0.571 4.571 11 H 0.068 0.932 12 C -0.187 4.187 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.137 4.137 19 C -0.062 4.062 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.033 0.967 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.004 0.996 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.676 -4.082 12.416 13.176 hybrid contribution 0.794 0.469 -1.247 1.551 sum -0.883 -3.612 11.169 11.772 Atomic orbital electron populations 1.21606 0.95267 1.01035 1.01788 1.21613 0.96791 0.94738 1.02009 1.21883 0.93414 0.96019 0.91907 0.89269 1.22425 0.97613 1.01643 1.02408 1.62148 1.59125 1.02042 1.02182 1.22043 0.95304 0.97830 0.90813 1.21413 0.98098 0.98256 0.95529 1.18648 0.93509 0.92838 0.92366 1.21638 1.25336 1.17893 0.92272 0.93207 1.25748 0.95442 0.95572 1.01942 1.70026 1.33728 1.27877 1.24115 0.85583 0.78348 0.78554 0.79629 1.19243 1.20611 1.20583 1.21540 0.99770 0.97979 0.94437 1.22027 0.97249 0.88687 0.98282 0.92600 0.92388 0.93794 0.89967 0.92916 0.93727 0.93270 0.90252 0.96717 0.90949 0.95342 0.92372 0.99608 0.93130 0.93192 0.93118 0.89786 0.95980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.80 71.98 0.71 -2.60 16 2 C -0.11 -2.69 5.22 30.59 0.16 -2.53 16 3 C 0.08 2.01 2.35 44.91 0.11 2.11 16 4 H 0.09 2.14 8.08 -2.38 -0.02 2.12 16 5 C -0.18 -4.58 8.50 71.98 0.61 -3.96 16 6 N -0.53 -18.22 4.10 -871.11 -3.57 -21.79 16 7 C 0.07 2.69 4.64 86.32 0.40 3.09 16 8 C -0.09 -4.67 5.12 30.65 0.16 -4.51 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.31 16 10 C -0.53 -30.47 8.56 25.60 0.22 -30.25 16 11 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 12 C 0.01 0.64 5.31 84.66 0.45 1.09 16 13 N -0.92 -54.23 11.37 21.45 0.24 -53.99 16 14 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 C -0.10 -4.27 5.32 30.65 0.16 -4.10 16 19 C 0.07 2.31 5.02 86.33 0.43 2.74 16 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.04 1.27 7.75 -2.39 -0.02 1.25 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.38 6.05 -2.39 -0.01 1.37 16 25 H 0.04 1.25 6.52 -2.38 -0.02 1.23 16 26 H 0.05 1.29 6.65 -2.39 -0.02 1.28 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.01 0.61 6.62 -2.39 -0.02 0.59 16 29 H 0.07 2.65 5.93 -2.38 -0.01 2.64 16 30 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 3.23 6.17 -2.39 -0.01 3.21 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.51 8.08 -2.39 -0.02 2.49 16 37 H 0.02 0.80 6.73 -2.39 -0.02 0.78 16 Total: -1.00 -60.79 278.12 3.09 -57.69 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.01 Total: 7.98 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 3.38 Total: -36.62 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.32 Total: -75.78 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.79 3.09 -57.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259121481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.243 kcal (2) G-P(sol) polarization free energy of solvation -60.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds