Wall clock time and date at job start Sun Mar 29 2020 21:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47229 * 2 1 4 4 H 1.09003 * 109.47178 * 56.24891 * 3 2 1 5 5 C 1.53003 * 109.47286 * 176.24594 * 3 2 1 6 6 N 1.46904 * 109.47186 * 296.24906 * 3 2 1 7 7 C 1.46843 * 111.00032 * 170.08232 * 6 3 2 8 8 C 1.53035 * 109.52529 * 185.84049 * 7 6 3 9 9 C 1.53127 * 109.27378 * 300.82101 * 8 7 6 10 10 C 1.53117 * 109.16087 * 57.65546 * 9 8 7 11 11 H 1.08998 * 109.50794 * 62.28632 * 10 9 8 12 12 C 1.50703 * 109.50282 * 182.36331 * 10 9 8 13 13 H 1.08005 * 119.99699 * 119.99795 * 12 10 9 14 14 C 1.37870 * 120.00101 * 300.00069 * 12 10 9 15 15 N 1.31521 * 119.99894 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00208 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47280 * 89.99576 * 16 14 12 18 18 H 1.48501 * 109.47307 * 209.99825 * 16 14 12 19 19 H 1.48500 * 109.46873 * 329.99938 * 16 14 12 20 20 C 1.46839 * 110.99608 * 294.29252 * 6 3 2 21 21 H 1.08998 * 109.47213 * 65.05606 * 1 2 3 22 22 H 1.09003 * 109.46988 * 185.05187 * 1 2 3 23 23 H 1.08995 * 109.47168 * 305.05408 * 1 2 3 24 24 H 1.09002 * 109.47334 * 240.00061 * 2 1 3 25 25 H 1.09003 * 109.47141 * 119.99893 * 2 1 3 26 26 H 1.08997 * 109.46893 * 299.99982 * 5 3 2 27 27 H 1.08999 * 109.46953 * 60.00501 * 5 3 2 28 28 H 1.08998 * 109.46764 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46566 * 305.85385 * 7 6 3 30 30 H 1.09003 * 109.46544 * 65.83062 * 7 6 3 31 31 H 1.08999 * 109.50703 * 60.75774 * 8 7 6 32 32 H 1.08991 * 109.50819 * 180.84130 * 8 7 6 33 33 H 1.09001 * 109.51859 * 177.55858 * 9 8 7 34 34 H 1.08999 * 109.52453 * 297.74690 * 9 8 7 35 35 H 0.96994 * 119.99805 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46541 * 294.17727 * 20 6 3 37 37 H 1.08997 * 109.46824 * 54.14426 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6228 1.9754 0.8545 5 6 3.5671 1.4435 0.0944 6 7 1.6257 2.1083 -1.2422 7 6 1.8898 3.5514 -1.1790 8 6 1.3156 4.2315 -2.4239 9 6 1.9642 3.6291 -3.6735 10 6 1.7157 2.1184 -3.6901 11 1 0.6443 1.9263 -3.7470 12 6 2.4002 1.5090 -4.8864 13 1 3.1591 0.7531 -4.7474 14 6 2.0578 1.9164 -6.1583 15 7 1.1333 2.8365 -6.3275 16 14 2.9057 1.1606 -7.6412 17 1 2.1478 -0.0355 -8.0885 18 1 2.9562 2.1552 -8.7428 19 1 4.2873 0.7612 -7.2711 20 6 2.2783 1.4996 -2.4083 21 1 -0.3633 0.4334 -0.9318 22 1 -0.3633 -1.0237 0.0905 23 1 -0.3633 0.5902 0.8412 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8744 0.9495 1.0161 27 1 3.9843 0.9107 -0.7600 28 1 3.9304 2.4712 0.0949 29 1 1.4196 3.9681 -0.2882 30 1 2.9655 3.7223 -1.1355 31 1 0.2379 4.0727 -2.4610 32 1 1.5248 5.3004 -2.3840 33 1 1.5268 4.0801 -4.5642 34 1 3.0369 3.8217 -3.6559 35 1 0.8927 3.1234 -7.2222 36 1 3.3521 1.6800 -2.3589 37 1 2.0904 0.4260 -2.4105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259377627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:15 Heat of formation + Delta-G solvation = -20.272291 kcal Electronic energy + Delta-G solvation = -15048.414608 eV Core-core repulsion = 12824.648521 eV Total energy + Delta-G solvation = -2223.766087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.81345 -35.07819 -32.73701 -30.70627 -29.81815 -28.62427 -24.92361 -23.97795 -22.67558 -21.25005 -19.66279 -18.16252 -16.41156 -15.49214 -14.44943 -14.22796 -13.99127 -13.53936 -13.30180 -13.20396 -12.73575 -12.27325 -12.07772 -11.65413 -11.57873 -11.24523 -10.91515 -10.90146 -10.74079 -10.61459 -10.38531 -10.14307 -10.00018 -9.75481 -9.38596 -8.94026 -8.62961 -8.25928 -7.49176 -5.93503 -3.99398 3.32794 3.39440 3.42400 4.43190 4.62361 5.10320 5.36369 5.38501 5.51980 5.69347 5.73410 5.84828 5.87699 6.01058 6.02505 6.12617 6.21685 6.28356 6.37388 6.39207 6.53779 6.59354 6.62351 6.76174 6.80986 6.85291 7.08224 7.28680 7.47995 7.77382 7.81266 7.94958 8.14884 8.23309 8.53878 9.04952 9.64639 11.12409 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035226 B = 0.009162 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.666386 B = 3055.446335 C = 3334.008403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.070 0.930 5 C -0.186 4.186 6 N -0.529 5.529 7 C 0.063 3.937 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.054 3.946 11 H 0.032 0.968 12 C -0.513 4.513 13 H 0.052 0.948 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.064 3.936 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.021 0.979 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -1.248 10.886 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.030 4.030 4 H 0.088 0.912 5 C -0.245 4.245 6 N -0.253 5.253 7 C -0.065 4.065 8 C -0.155 4.155 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.051 0.949 12 C -0.552 4.552 13 H 0.070 0.930 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.062 4.062 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.585 -1.210 10.687 10.771 hybrid contribution 1.432 -0.221 -0.740 1.627 sum 2.017 -1.430 9.948 10.250 Atomic orbital electron populations 1.21618 0.95401 1.00034 1.02714 1.21568 0.96749 0.95619 1.01293 1.21714 0.92453 0.95361 0.93479 0.91167 1.22473 0.98528 1.01688 1.01782 1.62195 1.58571 1.02508 1.02030 1.22009 0.97618 0.88587 0.98333 1.21673 1.00810 0.97262 0.95760 1.21643 0.97606 0.99169 0.96393 1.18662 0.96932 0.91349 0.89486 0.94938 1.21161 1.21390 1.21756 0.90846 0.92962 1.24932 0.95093 0.95087 0.98758 1.69896 1.30961 1.30050 1.21845 0.86652 0.79962 0.78990 0.82710 1.20737 1.21308 1.20062 1.22341 0.95130 0.98207 0.90554 0.91130 0.94018 0.93647 0.91566 0.92756 0.93011 0.91943 0.92930 0.92729 0.95874 0.92186 0.93732 0.89217 0.95313 0.93127 0.96111 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.73 37.16 0.36 -1.62 16 2 C -0.11 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C 0.08 1.21 2.32 -67.71 -0.16 1.05 16 4 H 0.07 1.01 7.99 -51.93 -0.41 0.60 16 5 C -0.19 -2.68 8.45 37.16 0.31 -2.37 16 6 N -0.53 -9.79 4.10 -226.69 -0.93 -10.72 16 7 C 0.06 1.12 5.13 -3.84 -0.02 1.10 16 8 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 9 C -0.11 -2.64 5.02 -26.61 -0.13 -2.78 16 10 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 11 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.51 -14.19 8.57 -34.44 -0.30 -14.48 16 13 H 0.05 1.43 7.75 -52.48 -0.41 1.02 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.58 11.35 55.43 0.63 -24.95 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.06 1.38 3.77 -3.83 -0.01 1.36 16 21 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.04 6.27 -51.93 -0.33 0.71 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.98 6.46 -51.93 -0.34 0.64 16 28 H 0.05 0.76 6.81 -51.93 -0.35 0.41 16 29 H 0.05 0.87 8.02 -51.93 -0.42 0.45 16 30 H 0.02 0.42 6.87 -51.93 -0.36 0.06 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.02 0.45 6.58 -51.93 -0.34 0.11 16 37 H 0.06 1.29 6.14 -51.93 -0.32 0.97 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -27.76 278.59 -8.19 -35.95 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.51 Total: -1.71 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.55 Total: -19.20 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.30 Total: -35.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.76 -8.19 -35.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259377627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.673 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds