Wall clock time and date at job start Sun Mar 29 2020 21:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47229 * 2 1 4 4 H 1.09003 * 109.47178 * 56.24891 * 3 2 1 5 5 C 1.53003 * 109.47286 * 176.24594 * 3 2 1 6 6 N 1.46904 * 109.47186 * 296.24906 * 3 2 1 7 7 C 1.46843 * 111.00032 * 170.08232 * 6 3 2 8 8 C 1.53035 * 109.52529 * 185.84049 * 7 6 3 9 9 C 1.53127 * 109.27378 * 300.82101 * 8 7 6 10 10 C 1.53117 * 109.16087 * 57.65546 * 9 8 7 11 11 H 1.08998 * 109.50794 * 62.28632 * 10 9 8 12 12 C 1.50703 * 109.50282 * 182.36331 * 10 9 8 13 13 H 1.08005 * 119.99699 * 119.99795 * 12 10 9 14 14 C 1.37870 * 120.00101 * 300.00069 * 12 10 9 15 15 N 1.31521 * 119.99894 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00208 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47280 * 89.99576 * 16 14 12 18 18 H 1.48501 * 109.47307 * 209.99825 * 16 14 12 19 19 H 1.48500 * 109.46873 * 329.99938 * 16 14 12 20 20 C 1.46839 * 110.99608 * 294.29252 * 6 3 2 21 21 H 1.08998 * 109.47213 * 65.05606 * 1 2 3 22 22 H 1.09003 * 109.46988 * 185.05187 * 1 2 3 23 23 H 1.08995 * 109.47168 * 305.05408 * 1 2 3 24 24 H 1.09002 * 109.47334 * 240.00061 * 2 1 3 25 25 H 1.09003 * 109.47141 * 119.99893 * 2 1 3 26 26 H 1.08997 * 109.46893 * 299.99982 * 5 3 2 27 27 H 1.08999 * 109.46953 * 60.00501 * 5 3 2 28 28 H 1.08998 * 109.46764 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46566 * 305.85385 * 7 6 3 30 30 H 1.09003 * 109.46544 * 65.83062 * 7 6 3 31 31 H 1.08999 * 109.50703 * 60.75774 * 8 7 6 32 32 H 1.08991 * 109.50819 * 180.84130 * 8 7 6 33 33 H 1.09001 * 109.51859 * 177.55858 * 9 8 7 34 34 H 1.08999 * 109.52453 * 297.74690 * 9 8 7 35 35 H 0.96994 * 119.99805 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46541 * 294.17727 * 20 6 3 37 37 H 1.08997 * 109.46824 * 54.14426 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6228 1.9754 0.8545 5 6 3.5671 1.4435 0.0944 6 7 1.6257 2.1083 -1.2422 7 6 1.8898 3.5514 -1.1790 8 6 1.3156 4.2315 -2.4239 9 6 1.9642 3.6291 -3.6735 10 6 1.7157 2.1184 -3.6901 11 1 0.6443 1.9263 -3.7470 12 6 2.4002 1.5090 -4.8864 13 1 3.1591 0.7531 -4.7474 14 6 2.0578 1.9164 -6.1583 15 7 1.1333 2.8365 -6.3275 16 14 2.9057 1.1606 -7.6412 17 1 2.1478 -0.0355 -8.0885 18 1 2.9562 2.1552 -8.7428 19 1 4.2873 0.7612 -7.2711 20 6 2.2783 1.4996 -2.4083 21 1 -0.3633 0.4334 -0.9318 22 1 -0.3633 -1.0237 0.0905 23 1 -0.3633 0.5902 0.8412 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8744 0.9495 1.0161 27 1 3.9843 0.9107 -0.7600 28 1 3.9304 2.4712 0.0949 29 1 1.4196 3.9681 -0.2882 30 1 2.9655 3.7223 -1.1355 31 1 0.2379 4.0727 -2.4610 32 1 1.5248 5.3004 -2.3840 33 1 1.5268 4.0801 -4.5642 34 1 3.0369 3.8217 -3.6559 35 1 0.8927 3.1234 -7.2222 36 1 3.3521 1.6800 -2.3589 37 1 2.0904 0.4260 -2.4105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259377627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:15 Heat of formation + Delta-G solvation = -36.140579 kcal Electronic energy + Delta-G solvation = -15049.102709 eV Core-core repulsion = 12824.648521 eV Total energy + Delta-G solvation = -2224.454188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32390 -36.69161 -34.59318 -32.19494 -31.62665 -29.94909 -26.94290 -25.38212 -24.07841 -22.99970 -21.13734 -19.81480 -18.40642 -17.13972 -16.33850 -15.71941 -15.34894 -14.94252 -14.85135 -14.65511 -14.37360 -13.94616 -13.69975 -13.22152 -12.91482 -12.80789 -12.66811 -12.51879 -12.44341 -12.04352 -11.80083 -11.64903 -11.55411 -11.43615 -11.27869 -10.79301 -10.57372 -10.36534 -8.96685 -8.07275 -6.21376 1.40453 1.40676 1.50981 2.42736 3.17768 3.19375 3.92260 4.16537 4.23763 4.34170 4.40547 4.46017 4.57977 4.66859 4.72677 4.75335 4.85256 4.91699 4.95581 5.00772 5.09106 5.17316 5.21472 5.22510 5.33871 5.42171 5.48302 5.56268 5.61287 5.64561 6.00821 6.17291 6.26018 6.49928 6.51677 6.92056 7.46342 8.97267 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035226 B = 0.009162 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.666386 B = 3055.446335 C = 3334.008403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.091 0.909 5 C -0.180 4.180 6 N -0.539 5.539 7 C 0.066 3.934 8 C -0.111 4.111 9 C -0.103 4.103 10 C 0.052 3.948 11 H -0.007 1.007 12 C -0.535 4.535 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.084 3.916 21 H 0.037 0.963 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.015 0.985 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -1.524 12.610 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C -0.031 4.031 4 H 0.109 0.891 5 C -0.239 4.239 6 N -0.263 5.263 7 C -0.062 4.062 8 C -0.149 4.149 9 C -0.141 4.141 10 C 0.033 3.967 11 H 0.011 0.989 12 C -0.574 4.574 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.043 4.043 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.303 -1.489 12.428 12.585 hybrid contribution 1.172 -0.139 -1.250 1.719 sum 2.475 -1.628 11.178 11.564 Atomic orbital electron populations 1.21569 0.95376 1.00905 1.01540 1.21584 0.96736 0.95121 1.01675 1.21870 0.93343 0.95778 0.92151 0.89087 1.22409 0.97494 1.01691 1.02324 1.62126 1.58619 1.03054 1.02477 1.22010 0.97945 0.88054 0.98198 1.21587 0.99764 0.98674 0.94844 1.21450 0.97016 0.98383 0.97298 1.18592 0.94397 0.92546 0.91131 0.98873 1.21528 1.21598 1.21973 0.92252 0.93267 1.25722 0.95739 0.95506 1.01581 1.70042 1.32034 1.31014 1.22407 0.85638 0.79106 0.78240 0.79163 1.20146 1.20820 1.19349 1.21932 0.94497 0.97682 0.90222 0.94351 0.92688 0.92192 0.93592 0.89883 0.90310 0.93853 0.93033 0.89565 0.95536 0.93265 0.91428 0.92557 0.96129 0.93113 0.96650 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.73 71.98 0.70 -2.92 16 2 C -0.11 -3.00 5.31 30.59 0.16 -2.83 16 3 C 0.08 2.14 2.32 44.91 0.10 2.25 16 4 H 0.09 2.23 7.99 -2.39 -0.02 2.21 16 5 C -0.18 -4.70 8.45 71.98 0.61 -4.10 16 6 N -0.54 -19.32 4.10 -871.12 -3.57 -22.89 16 7 C 0.07 2.22 5.13 86.33 0.44 2.66 16 8 C -0.11 -4.36 6.09 30.65 0.19 -4.17 16 9 C -0.10 -5.09 5.02 30.68 0.15 -4.94 16 10 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 11 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 12 C -0.53 -30.43 8.57 25.60 0.22 -30.21 16 13 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 14 C 0.01 0.74 5.30 84.65 0.45 1.19 16 15 N -0.92 -54.25 11.35 21.45 0.24 -54.01 16 16 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.08 3.63 3.77 86.33 0.33 3.96 16 21 H 0.04 1.25 7.86 -2.39 -0.02 1.23 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.40 6.27 -2.39 -0.01 1.38 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.29 6.46 -2.39 -0.02 1.27 16 28 H 0.05 1.35 6.81 -2.39 -0.02 1.33 16 29 H 0.09 2.42 8.02 -2.39 -0.02 2.41 16 30 H 0.03 0.89 6.87 -2.39 -0.02 0.88 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 3.14 6.15 -2.39 -0.01 3.12 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.02 0.68 6.58 -2.39 -0.02 0.66 16 37 H 0.05 2.39 6.14 -2.39 -0.01 2.38 16 Total: -1.00 -61.05 278.59 3.03 -58.01 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.01 Total: 8.73 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.33 Total: -36.41 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -3.33 Total: -76.90 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -61.05 3.03 -58.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259377627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.871 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds