Wall clock time and date at job start Sun Mar 29 2020 21:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47163 * 2 1 4 4 H 1.08994 * 109.46960 * 302.74062 * 3 2 1 5 5 C 1.52999 * 109.47180 * 182.73579 * 3 2 1 6 6 N 1.46900 * 109.47051 * 62.73610 * 3 2 1 7 7 C 1.46845 * 111.00262 * 191.46915 * 6 3 2 8 8 C 1.53035 * 109.52640 * 174.16102 * 7 6 3 9 9 C 1.53126 * 109.27844 * 59.17632 * 8 7 6 10 10 C 1.53120 * 109.15866 * 302.34947 * 9 8 7 11 11 H 1.08995 * 109.50400 * 297.70802 * 10 9 8 12 12 C 1.50701 * 109.49793 * 177.63148 * 10 9 8 13 13 H 1.08002 * 120.00264 * 245.35463 * 12 10 9 14 14 C 1.37886 * 119.99826 * 65.36430 * 12 10 9 15 15 N 1.31509 * 120.00216 * 8.52228 * 14 12 10 16 16 Si 1.86799 * 119.99591 * 188.52441 * 14 12 10 17 17 H 1.48503 * 109.47082 * 94.98920 * 16 14 12 18 18 H 1.48496 * 109.47086 * 214.98317 * 16 14 12 19 19 H 1.48497 * 109.47504 * 334.98589 * 16 14 12 20 20 C 1.46855 * 111.00076 * 67.25646 * 6 3 2 21 21 H 1.08998 * 109.46925 * 174.90657 * 1 2 3 22 22 H 1.08999 * 109.46996 * 294.91004 * 1 2 3 23 23 H 1.09000 * 109.46667 * 54.91135 * 1 2 3 24 24 H 1.08997 * 109.47160 * 239.99956 * 2 1 3 25 25 H 1.08995 * 109.47310 * 119.99913 * 2 1 3 26 26 H 1.09003 * 109.47022 * 59.99971 * 5 3 2 27 27 H 1.09000 * 109.47060 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47022 * 300.00107 * 5 3 2 29 29 H 1.08997 * 109.46286 * 54.14159 * 7 6 3 30 30 H 1.08998 * 109.45960 * 294.17687 * 7 6 3 31 31 H 1.08992 * 109.50482 * 179.11867 * 8 7 6 32 32 H 1.08995 * 109.50398 * 299.20177 * 8 7 6 33 33 H 1.09009 * 109.51810 * 62.25298 * 9 8 7 34 34 H 1.08996 * 109.52326 * 182.43585 * 9 8 7 35 35 H 0.97001 * 120.00368 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.45626 * 65.82276 * 20 6 3 37 37 H 1.08997 * 109.44949 * 305.85222 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6372 1.9703 -0.8644 5 6 3.5685 1.4431 -0.0689 6 7 1.6051 2.1157 1.2311 7 6 1.8365 3.5635 1.1493 8 6 1.2413 4.2471 2.3823 9 6 1.8977 3.6769 3.6428 10 6 1.6837 2.1611 3.6790 11 1 0.6167 1.9455 3.7340 12 6 2.3765 1.5840 4.8865 13 1 3.2106 0.9097 4.7596 14 6 1.9455 1.9168 6.1533 15 7 0.8325 2.5993 6.3110 16 14 2.9426 1.3981 7.6453 17 1 3.8466 2.5060 8.0460 18 1 2.0242 1.0782 8.7675 19 1 3.7496 0.1979 7.3086 20 6 2.2660 1.5380 2.4085 21 1 -0.3633 -1.0236 -0.0912 22 1 -0.3633 0.4328 0.9321 23 1 -0.3633 0.5908 -0.8409 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8912 0.9436 -0.9824 27 1 3.9318 2.4708 -0.0684 28 1 3.9713 0.9153 0.7956 29 1 1.3611 3.9570 0.2509 30 1 2.9081 3.7582 1.1078 31 1 1.4269 5.3198 2.3288 32 1 0.1673 4.0649 2.4166 33 1 2.9659 3.8937 3.6270 34 1 1.4462 4.1299 4.5253 35 1 0.5294 2.8337 7.2022 36 1 3.3357 1.7423 2.3610 37 1 2.1023 0.4605 2.4244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259377634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:18 Heat of formation + Delta-G solvation = -21.677477 kcal Electronic energy + Delta-G solvation = -15037.979578 eV Core-core repulsion = 12814.152557 eV Total energy + Delta-G solvation = -2223.827021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82070 -35.07824 -32.72727 -30.74969 -29.82520 -28.65172 -24.90501 -24.00434 -22.67900 -21.27577 -19.67811 -18.19405 -16.40075 -15.50951 -14.44215 -14.24407 -13.99673 -13.54156 -13.30136 -13.21202 -12.74949 -12.24771 -12.10131 -11.69666 -11.58528 -11.24841 -10.94616 -10.88528 -10.74339 -10.64160 -10.38678 -10.15946 -10.05173 -9.82875 -9.36623 -8.91547 -8.67732 -8.26216 -7.50005 -5.96504 -3.98141 3.32696 3.40072 3.42848 4.43451 4.61703 5.10429 5.35617 5.38408 5.52001 5.69398 5.72314 5.83166 5.87053 5.99711 6.02008 6.10016 6.21947 6.28134 6.36762 6.37181 6.52094 6.59046 6.60930 6.74356 6.79229 6.81532 7.05068 7.24585 7.39658 7.76166 7.80039 7.93045 8.07125 8.17821 8.53377 9.06645 9.64742 11.12528 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035283 B = 0.009088 C = 0.008458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.385345 B = 3080.137849 C = 3309.549743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.070 0.930 5 C -0.186 4.186 6 N -0.529 5.529 7 C 0.063 3.937 8 C -0.117 4.117 9 C -0.105 4.105 10 C 0.053 3.947 11 H 0.040 0.960 12 C -0.515 4.515 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.885 3.115 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.065 3.935 21 H 0.040 0.960 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.020 0.980 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -0.820 -11.023 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.030 4.030 4 H 0.088 0.912 5 C -0.244 4.244 6 N -0.253 5.253 7 C -0.065 4.065 8 C -0.155 4.155 9 C -0.143 4.143 10 C 0.034 3.966 11 H 0.058 0.942 12 C -0.554 4.554 13 H 0.071 0.929 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.713 3.287 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.062 4.062 21 H 0.060 0.940 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.046 -0.821 -10.830 10.911 hybrid contribution 1.508 -0.041 0.789 1.702 sum 2.553 -0.861 -10.041 10.397 Atomic orbital electron populations 1.21615 0.95378 1.00013 1.02748 1.21555 0.96775 0.95576 1.01250 1.21711 0.92344 0.95367 0.93576 0.91185 1.22473 0.98471 1.01653 1.01850 1.62198 1.58291 1.02728 1.02095 1.21994 0.97694 0.88553 0.98261 1.21657 1.00850 0.97239 0.95741 1.21589 0.97559 0.99562 0.95606 1.18672 0.97504 0.90776 0.89630 0.94227 1.21135 1.15699 1.27847 0.90703 0.92947 1.24927 0.94634 0.95384 0.98738 1.69970 1.20411 1.39775 1.22303 0.86692 0.80238 0.78809 0.82931 1.20837 1.21324 1.19957 1.22338 0.95003 0.98537 0.90274 0.94039 0.91071 0.93671 0.92773 0.91619 0.93002 0.92970 0.91901 0.92640 0.95879 0.93686 0.92022 0.95057 0.90936 0.93130 0.96157 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.71 37.16 0.36 -1.63 16 2 C -0.11 -1.63 5.32 -26.73 -0.14 -1.77 16 3 C 0.08 1.20 2.33 -67.71 -0.16 1.05 16 4 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 5 C -0.19 -2.66 8.43 37.16 0.31 -2.35 16 6 N -0.53 -9.73 4.04 -226.70 -0.92 -10.65 16 7 C 0.06 1.12 5.16 -3.84 -0.02 1.10 16 8 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 9 C -0.10 -2.48 5.09 -26.60 -0.14 -2.62 16 10 C 0.05 1.33 2.13 -91.69 -0.20 1.14 16 11 H 0.04 1.12 8.10 -51.93 -0.42 0.70 16 12 C -0.52 -14.24 8.49 -34.44 -0.29 -14.53 16 13 H 0.05 1.44 7.76 -52.49 -0.41 1.03 16 14 C 0.06 1.81 5.24 -17.82 -0.09 1.72 16 15 N -0.89 -25.70 12.12 55.43 0.67 -25.02 16 16 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.07 1.39 3.74 -3.83 -0.01 1.37 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.03 6.36 -51.93 -0.33 0.70 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.75 6.87 -51.93 -0.36 0.40 16 28 H 0.06 0.98 6.45 -51.93 -0.33 0.65 16 29 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 30 H 0.02 0.41 6.92 -51.93 -0.36 0.05 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.07 1.91 6.92 -51.93 -0.36 1.55 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.02 0.44 6.57 -51.93 -0.34 0.10 16 37 H 0.06 1.31 6.22 -51.93 -0.32 0.99 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -27.90 280.03 -8.15 -36.05 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.56 Total: -2.04 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.54 Total: -18.99 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.24 Total: -35.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.90 -8.15 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259377634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.372 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds