Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48506 * 109.46964 * 270.00093 * 3 2 1 5 5 H 1.48504 * 109.47135 * 29.99967 * 3 2 1 6 6 H 1.48498 * 109.47165 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00008 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00314 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00268 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00067 * 179.97438 * 10 9 7 13 13 C 1.50706 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.33635 * 122.75319 * 124.73143 * 13 12 10 15 15 S 1.76192 * 107.92524 * 179.97438 * 14 13 12 16 16 C 1.70976 * 90.28427 * 0.27803 * 15 14 13 17 17 N 1.29027 * 110.16712 * 359.83656 * 16 15 14 18 18 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 19 19 H 0.97005 * 119.99887 * 359.97438 * 9 7 2 20 20 H 1.08997 * 109.47434 * 59.99616 * 12 10 9 21 21 H 1.08998 * 109.47220 * 299.99642 * 12 10 9 22 22 H 1.08001 * 126.03202 * 0.03585 * 14 13 12 23 23 H 1.08001 * 124.91761 * 179.84059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 6 6.0632 -3.7912 -0.0006 14 6 6.9079 -4.2589 -0.9245 15 16 7.2342 -5.9504 -0.5543 16 6 6.1958 -5.8627 0.8013 17 7 5.7005 -4.6760 0.9062 18 1 -0.4850 0.8401 -0.0004 19 1 3.8649 -0.3632 0.0004 20 1 5.9242 -1.8565 0.8899 21 1 5.9241 -1.8566 -0.8900 22 1 7.3189 -3.6987 -1.7514 23 1 5.9851 -6.6821 1.4726 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259599301.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = 14.109506 kcal Electronic energy + Delta-G solvation = -11457.038513 eV Core-core repulsion = 9204.591008 eV Total energy + Delta-G solvation = -2252.447504 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.75868 -37.91695 -33.93473 -31.91211 -31.42605 -28.10226 -25.07205 -24.03557 -19.84955 -19.19116 -18.55393 -17.40383 -15.97974 -15.47554 -14.86505 -14.25396 -13.80975 -13.56114 -13.09259 -12.94761 -12.40782 -12.11135 -11.78879 -11.23093 -11.05829 -10.56575 -9.94011 -9.52867 -9.35773 -9.25620 -8.73479 -8.37971 -8.13471 -6.26847 -3.78066 0.93038 1.58658 1.89089 3.05896 3.09102 3.09839 3.17939 3.80213 4.13783 4.45734 4.73744 5.18537 5.24603 5.38661 5.52633 5.74570 5.94540 6.05520 6.36153 7.61200 8.03973 8.18614 8.64047 8.99466 9.46651 9.87810 10.86495 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.077359 B = 0.006960 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.864120 B = 4022.136331 C = 4241.430397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.457 3.543 11 O -0.559 6.559 12 C -0.067 4.067 13 C 0.103 3.897 14 C -0.258 4.258 15 S 0.081 5.919 16 C 0.027 3.973 17 N -0.434 5.434 18 H 0.273 0.727 19 H 0.371 0.629 20 H 0.098 0.902 21 H 0.096 0.904 22 H 0.175 0.825 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.224 -5.098 -1.102 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.163 4.163 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.136 0.864 9 N -0.232 5.232 10 C 0.242 3.758 11 O -0.440 6.440 12 C -0.110 4.110 13 C -0.029 4.029 14 C -0.397 4.397 15 S 0.332 5.668 16 C -0.273 4.273 17 N -0.146 5.146 18 H 0.083 0.917 19 H 0.203 0.797 20 H 0.116 0.884 21 H 0.114 0.886 22 H 0.193 0.807 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.828 -6.390 -1.082 17.104 hybrid contribution 0.180 2.191 -0.009 2.199 sum 16.008 -4.198 -1.092 16.586 Atomic orbital electron populations 1.69626 1.05639 1.27412 1.49696 1.25038 0.95504 0.97968 0.97780 0.86663 0.79824 0.84032 0.78830 1.19660 1.20214 1.19434 1.19429 0.79269 0.96599 1.47849 0.86380 1.42186 1.07497 1.06029 1.67503 1.19480 0.87727 0.84625 0.83927 1.90591 1.69386 1.30895 1.53163 1.20228 0.96005 0.90760 1.04022 1.19786 0.95205 0.96641 0.91298 1.26719 1.08696 0.97534 1.06733 1.83758 1.46211 1.09902 1.26938 1.28409 0.99275 0.98699 1.00923 1.66037 1.21017 1.00778 1.26796 0.91680 0.79666 0.88413 0.88577 0.80722 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.96 55.50 0.77 -25.48 14 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 14 3 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 14 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 14 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 6 H -0.27 -5.45 6.52 56.52 0.37 -5.08 14 7 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 14 8 H 0.12 3.92 7.39 -52.49 -0.39 3.53 14 9 N -0.59 -14.47 5.09 -10.97 -0.06 -14.53 14 10 C 0.46 10.81 7.75 -10.99 -0.09 10.73 14 11 O -0.56 -15.76 15.02 5.54 0.08 -15.68 14 12 C -0.07 -1.15 6.20 -29.03 -0.18 -1.33 14 13 C 0.10 1.78 5.64 -84.22 -0.47 1.31 14 14 C -0.26 -3.57 11.07 29.12 0.32 -3.25 14 15 S 0.08 0.96 23.22 -107.50 -2.50 -1.54 14 16 C 0.03 0.38 12.23 51.58 0.63 1.01 14 17 N -0.43 -8.07 9.68 -11.89 -0.12 -8.19 14 18 H 0.27 7.47 8.31 -40.82 -0.34 7.13 14 19 H 0.37 7.84 5.76 -40.82 -0.24 7.61 14 20 H 0.10 1.48 8.14 -51.93 -0.42 1.05 14 21 H 0.10 1.30 8.03 -51.93 -0.42 0.89 14 22 H 0.18 1.88 8.06 -52.49 -0.42 1.46 14 23 H 0.20 2.07 8.06 -52.49 -0.42 1.65 14 LS Contribution 227.71 15.07 3.43 3.43 Total: -1.00 -34.97 227.71 -4.60 -39.57 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -1.48 Total: 6.97 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.03 Total: 0.55 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.60 Total: -48.20 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -34.97 -4.60 -39.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259599301.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.682 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds