Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48506 * 109.46964 * 270.00093 * 3 2 1 5 5 H 1.48504 * 109.47135 * 29.99967 * 3 2 1 6 6 H 1.48498 * 109.47165 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00008 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00314 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00268 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00067 * 179.97438 * 10 9 7 13 13 C 1.50706 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.33635 * 122.75319 * 124.73143 * 13 12 10 15 15 S 1.76192 * 107.92524 * 179.97438 * 14 13 12 16 16 C 1.70976 * 90.28427 * 0.27803 * 15 14 13 17 17 N 1.29027 * 110.16712 * 359.83656 * 16 15 14 18 18 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 19 19 H 0.97005 * 119.99887 * 359.97438 * 9 7 2 20 20 H 1.08997 * 109.47434 * 59.99616 * 12 10 9 21 21 H 1.08998 * 109.47220 * 299.99642 * 12 10 9 22 22 H 1.08001 * 126.03202 * 0.03585 * 14 13 12 23 23 H 1.08001 * 124.91761 * 179.84059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 6 6.0632 -3.7912 -0.0006 14 6 6.9079 -4.2589 -0.9245 15 16 7.2342 -5.9504 -0.5543 16 6 6.1958 -5.8627 0.8013 17 7 5.7005 -4.6760 0.9062 18 1 -0.4850 0.8401 -0.0004 19 1 3.8649 -0.3632 0.0004 20 1 5.9242 -1.8565 0.8899 21 1 5.9241 -1.8566 -0.8900 22 1 7.3189 -3.6987 -1.7514 23 1 5.9851 -6.6821 1.4726 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259599301.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = -13.819832 kcal Electronic energy + Delta-G solvation = -11458.249620 eV Core-core repulsion = 9204.591008 eV Total energy + Delta-G solvation = -2253.658611 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.05133 -39.67672 -35.99165 -33.80486 -32.94146 -29.44699 -26.72238 -25.49683 -21.57537 -20.77784 -20.15449 -18.71595 -17.71485 -16.78797 -16.63967 -15.77167 -15.44163 -15.10833 -14.65845 -14.11148 -14.00898 -13.97383 -13.25696 -12.85580 -12.40992 -12.26856 -11.96973 -11.49801 -10.53693 -10.44221 -10.25768 -10.23101 -9.65316 -8.40678 -6.01739 -0.12198 0.60360 0.84054 1.31397 1.37009 1.46111 1.90763 1.99265 2.24426 3.04220 3.16725 3.40362 4.04466 4.27509 4.42473 4.48822 4.57614 4.83645 5.20345 5.56114 5.94749 6.59420 6.88711 6.97517 7.40137 7.98734 8.77354 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.077359 B = 0.006960 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.864120 B = 4022.136331 C = 4241.430397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.018 4.018 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.328 4.328 8 H 0.050 0.950 9 N -0.592 5.592 10 C 0.454 3.546 11 O -0.613 6.613 12 C -0.055 4.055 13 C 0.058 3.942 14 C -0.253 4.253 15 S 0.159 5.841 16 C 0.004 3.996 17 N -0.494 5.494 18 H 0.279 0.721 19 H 0.391 0.609 20 H 0.120 0.880 21 H 0.140 0.860 22 H 0.208 0.792 23 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.658 -3.769 -1.876 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.217 4.217 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.068 0.932 9 N -0.234 5.234 10 C 0.242 3.758 11 O -0.497 6.497 12 C -0.097 4.097 13 C -0.074 4.074 14 C -0.392 4.392 15 S 0.411 5.589 16 C -0.294 4.294 17 N -0.208 5.208 18 H 0.088 0.912 19 H 0.227 0.773 20 H 0.138 0.862 21 H 0.158 0.842 22 H 0.225 0.775 23 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 19.300 -5.082 -1.856 20.044 hybrid contribution -0.891 1.555 0.192 1.802 sum 18.409 -3.528 -1.663 18.818 Atomic orbital electron populations 1.69816 1.08222 1.29255 1.50489 1.26175 0.96534 1.02891 0.96055 0.85321 0.79456 0.76359 0.80091 1.17803 1.20065 1.15359 1.18987 0.81615 0.94803 1.50363 0.93152 1.42009 1.05724 1.07510 1.68139 1.20807 0.90709 0.83320 0.81002 1.90561 1.71498 1.32922 1.54747 1.20229 0.89998 0.92306 1.07152 1.19917 0.97600 0.96846 0.92988 1.27191 1.06913 0.99039 1.06080 1.83459 1.43536 1.07701 1.24177 1.28837 0.99606 0.98319 1.02593 1.66017 1.23257 1.02589 1.28939 0.91161 0.77291 0.86193 0.84218 0.77504 0.76585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.96 21.66 0.30 -57.43 14 2 C -0.02 -1.05 5.50 84.92 0.47 -0.58 14 3 Si 0.97 39.33 27.74 68.60 1.90 41.23 14 4 H -0.25 -9.64 7.11 99.48 0.71 -8.93 14 5 H -0.28 -11.12 7.11 99.48 0.71 -10.41 14 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 14 7 C -0.33 -19.86 10.16 84.04 0.85 -19.01 14 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 14 9 N -0.59 -28.84 5.09 -306.99 -1.56 -30.40 14 10 C 0.45 21.57 7.75 87.66 0.68 22.25 14 11 O -0.61 -36.09 15.02 -3.08 -0.05 -36.14 14 12 C -0.05 -1.74 6.20 29.10 0.18 -1.56 14 13 C 0.06 1.92 5.64 41.52 0.23 2.16 14 14 C -0.25 -6.18 11.07 66.77 0.74 -5.44 14 15 S 0.16 3.30 23.22 -56.49 -1.31 1.99 14 16 C 0.00 0.12 12.23 130.65 1.60 1.72 14 17 N -0.49 -18.24 9.68 -191.54 -1.85 -20.10 14 18 H 0.28 15.65 8.31 -92.71 -0.77 14.88 14 19 H 0.39 15.52 5.76 -92.70 -0.53 14.99 14 20 H 0.12 3.26 8.14 -2.39 -0.02 3.24 14 21 H 0.14 3.18 8.03 -2.39 -0.02 3.16 14 22 H 0.21 3.45 8.06 -2.91 -0.02 3.43 14 23 H 0.22 4.42 8.06 -2.91 -0.02 4.39 14 Total: -1.00 -83.00 227.71 2.83 -80.16 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.65 Total: 21.14 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.75 Total: -0.46 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -3.11 Total: -107.93 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.05 Total: -36.14 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.31 Total: 1.99 kcal Total: -83.00 2.83 -80.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259599301.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.344 kcal (2) G-P(sol) polarization free energy of solvation -82.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds