Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47443 * 2 1 4 4 C 1.52999 * 109.47029 * 119.99371 * 2 1 3 5 5 C 1.53004 * 109.47353 * 297.29409 * 4 2 1 6 6 C 1.50701 * 109.46968 * 184.56928 * 5 4 2 7 7 H 1.08002 * 120.00461 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00088 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99960 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46561 * 90.00668 * 10 8 6 12 12 H 1.48500 * 109.46951 * 210.00305 * 10 8 6 13 13 H 1.48493 * 109.47122 * 330.00332 * 10 8 6 14 14 N 1.46896 * 109.47436 * 239.99560 * 2 1 3 15 15 C 1.46845 * 111.00071 * 62.28176 * 14 2 1 16 16 C 1.53032 * 109.52528 * 185.84150 * 15 14 2 17 17 C 1.53114 * 109.28057 * 300.82123 * 16 15 14 18 18 C 1.53122 * 109.21098 * 57.62417 * 17 16 15 19 19 C 1.46844 * 111.00549 * 186.49671 * 14 2 1 20 20 H 1.08991 * 109.47017 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46795 * 300.00524 * 1 2 3 22 22 H 1.08999 * 109.46831 * 60.00018 * 1 2 3 23 23 H 1.09000 * 109.47156 * 57.29512 * 4 2 1 24 24 H 1.09005 * 109.47013 * 177.29223 * 4 2 1 25 25 H 1.09000 * 109.46748 * 304.56394 * 5 4 2 26 26 H 1.08987 * 109.47037 * 64.56878 * 5 4 2 27 27 H 0.96996 * 120.00135 * 179.97438 * 9 8 6 28 28 H 1.09005 * 109.46127 * 65.82407 * 15 14 2 29 29 H 1.08999 * 109.45466 * 305.85632 * 15 14 2 30 30 H 1.09008 * 109.50237 * 180.88472 * 16 15 14 31 31 H 1.08994 * 109.50628 * 60.76483 * 16 15 14 32 32 H 1.08998 * 109.52381 * 177.55818 * 17 16 15 33 33 H 1.08997 * 109.52757 * 297.68699 * 17 16 15 34 34 H 1.09000 * 109.50453 * 62.31853 * 18 17 16 35 35 H 1.09003 * 109.50463 * 182.43648 * 18 17 16 36 36 H 1.08999 * 109.46260 * 294.17894 * 19 14 2 37 37 H 1.09004 * 109.45959 * 54.15113 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5863 0.0385 2.4976 6 6 2.1815 -0.6071 3.7224 7 1 2.8191 -1.4728 3.6208 8 6 1.9111 -0.0931 4.9729 9 7 2.4308 -0.6561 6.0418 10 14 0.8076 1.4039 5.1488 11 1 -0.6030 0.9642 5.2975 12 1 1.2134 2.1796 6.3483 13 1 0.9354 2.2577 3.9406 14 7 2.0197 -0.6926 -1.1993 15 6 1.5940 0.0040 -2.4200 16 6 1.9953 -0.8200 -3.6454 17 6 3.5141 -1.0136 -3.6493 18 6 3.9383 -1.6967 -2.3462 19 6 3.4794 -0.8480 -1.1583 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6376 -1.7338 1.2740 24 1 3.1289 -0.7634 1.2254 25 1 1.9205 1.0741 2.4341 26 1 0.4989 0.0110 2.5645 27 1 2.2409 -0.2943 6.9215 28 1 2.0741 0.9815 -2.4665 29 1 0.5116 0.1314 -2.4065 30 1 1.6931 -0.2952 -4.5518 31 1 1.5046 -1.7925 -3.6067 32 1 3.7998 -1.6366 -4.4968 33 1 4.0048 -0.0436 -3.7285 34 1 3.4791 -2.6834 -2.2863 35 1 5.0234 -1.7978 -2.3248 36 1 3.9507 0.1335 -1.2107 37 1 3.7662 -1.3394 -0.2286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259630316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = -21.481471 kcal Electronic energy + Delta-G solvation = -14506.073714 eV Core-core repulsion = 12282.255193 eV Total energy + Delta-G solvation = -2223.818521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12737 -35.47016 -32.94551 -31.18609 -30.84085 -28.70117 -25.63908 -23.95601 -22.63587 -21.12280 -19.66522 -19.23408 -16.81802 -15.98694 -14.77347 -14.70518 -14.17533 -14.04915 -13.53451 -13.38414 -13.26419 -12.71897 -12.51396 -12.17259 -11.69375 -11.32965 -11.23500 -11.11019 -10.88066 -10.84177 -10.58488 -10.23737 -10.12683 -9.80584 -9.61278 -9.44966 -9.08219 -8.49978 -8.00805 -6.01135 -3.98425 3.32306 3.39511 3.43351 4.11897 4.47841 4.85878 4.90657 4.96183 5.27944 5.32806 5.43514 5.47783 5.60080 5.61149 5.67818 5.78179 5.83292 5.93142 5.94967 6.07125 6.14998 6.20897 6.25893 6.33754 6.39966 6.52866 6.61823 6.68271 6.97624 7.34249 7.40856 7.46976 7.53037 7.84653 8.58487 9.04557 9.61798 11.12554 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053058 B = 0.006727 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.596819 B = 4161.089178 C = 4522.085029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.033 0.967 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.533 5.533 15 C 0.051 3.949 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.116 4.116 19 C 0.049 3.951 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 1.390 -18.043 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.135 4.135 5 C -0.050 4.050 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.545 5.545 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 N -0.258 5.258 15 C -0.077 4.077 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.079 4.079 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.016 0.943 -17.854 17.908 hybrid contribution -0.178 1.633 0.289 1.668 sum -1.193 2.576 -17.565 17.793 Atomic orbital electron populations 1.21887 0.94824 1.02311 1.00948 1.21792 0.95493 0.95487 0.90155 0.94874 1.21609 0.99986 0.99524 0.92354 1.19607 0.96237 0.95688 0.93515 1.21166 1.30199 1.14702 0.89495 0.91087 1.25032 0.95736 0.96876 0.95893 1.69919 1.45140 1.41234 0.98169 0.86789 0.81238 0.83675 0.77662 1.20267 1.21453 1.19078 1.61975 1.11310 1.50863 1.01691 1.22118 1.00564 0.94809 0.90207 1.21570 0.96025 1.00899 0.96810 1.21575 0.96145 1.00356 0.97751 1.21590 1.00003 0.99773 0.94030 1.22183 0.87745 0.98518 0.99470 0.91969 0.91681 0.93719 0.92062 0.92529 0.96995 0.96746 0.92812 0.95589 0.90650 0.92133 0.91217 0.92256 0.92607 0.91187 0.91875 0.95448 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.74 37.16 0.32 -1.92 16 2 C 0.08 1.34 2.17 -67.72 -0.15 1.19 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.10 -1.98 4.31 -26.73 -0.12 -2.10 16 5 C -0.01 -0.31 3.62 -27.88 -0.10 -0.41 16 6 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 7 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 10 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 14 N -0.53 -8.09 4.53 -226.70 -1.03 -9.12 16 15 C 0.05 0.66 5.26 -3.84 -0.02 0.64 16 16 C -0.12 -1.25 6.09 -26.66 -0.16 -1.41 16 17 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 18 C -0.12 -1.37 6.10 -26.65 -0.16 -1.54 16 19 C 0.05 0.70 5.08 -3.83 -0.02 0.68 16 20 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.06 1.08 6.60 -51.93 -0.34 0.74 16 22 H 0.04 0.60 6.33 -51.93 -0.33 0.28 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.06 1.16 6.04 -51.93 -0.31 0.85 16 25 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 26 H 0.01 0.34 6.16 -51.94 -0.32 0.02 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.93 6.08 -51.93 -0.32 0.62 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 1.38 5.80 -51.93 -0.30 1.07 16 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -30.31 279.29 -8.24 -38.55 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.53 Total: -3.65 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.99 Total: -19.80 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.25 Total: -36.69 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.31 -8.24 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.067 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds