Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47443 * 2 1 4 4 C 1.52999 * 109.47029 * 119.99371 * 2 1 3 5 5 C 1.53004 * 109.47353 * 297.29409 * 4 2 1 6 6 C 1.50701 * 109.46968 * 184.56928 * 5 4 2 7 7 H 1.08002 * 120.00461 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00088 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99960 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46561 * 90.00668 * 10 8 6 12 12 H 1.48500 * 109.46951 * 210.00305 * 10 8 6 13 13 H 1.48493 * 109.47122 * 330.00332 * 10 8 6 14 14 N 1.46896 * 109.47436 * 239.99560 * 2 1 3 15 15 C 1.46845 * 111.00071 * 62.28176 * 14 2 1 16 16 C 1.53032 * 109.52528 * 185.84150 * 15 14 2 17 17 C 1.53114 * 109.28057 * 300.82123 * 16 15 14 18 18 C 1.53122 * 109.21098 * 57.62417 * 17 16 15 19 19 C 1.46844 * 111.00549 * 186.49671 * 14 2 1 20 20 H 1.08991 * 109.47017 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46795 * 300.00524 * 1 2 3 22 22 H 1.08999 * 109.46831 * 60.00018 * 1 2 3 23 23 H 1.09000 * 109.47156 * 57.29512 * 4 2 1 24 24 H 1.09005 * 109.47013 * 177.29223 * 4 2 1 25 25 H 1.09000 * 109.46748 * 304.56394 * 5 4 2 26 26 H 1.08987 * 109.47037 * 64.56878 * 5 4 2 27 27 H 0.96996 * 120.00135 * 179.97438 * 9 8 6 28 28 H 1.09005 * 109.46127 * 65.82407 * 15 14 2 29 29 H 1.08999 * 109.45466 * 305.85632 * 15 14 2 30 30 H 1.09008 * 109.50237 * 180.88472 * 16 15 14 31 31 H 1.08994 * 109.50628 * 60.76483 * 16 15 14 32 32 H 1.08998 * 109.52381 * 177.55818 * 17 16 15 33 33 H 1.08997 * 109.52757 * 297.68699 * 17 16 15 34 34 H 1.09000 * 109.50453 * 62.31853 * 18 17 16 35 35 H 1.09003 * 109.50463 * 182.43648 * 18 17 16 36 36 H 1.08999 * 109.46260 * 294.17894 * 19 14 2 37 37 H 1.09004 * 109.45959 * 54.15113 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5863 0.0385 2.4976 6 6 2.1815 -0.6071 3.7224 7 1 2.8191 -1.4728 3.6208 8 6 1.9111 -0.0931 4.9729 9 7 2.4308 -0.6561 6.0418 10 14 0.8076 1.4039 5.1488 11 1 -0.6030 0.9642 5.2975 12 1 1.2134 2.1796 6.3483 13 1 0.9354 2.2577 3.9406 14 7 2.0197 -0.6926 -1.1993 15 6 1.5940 0.0040 -2.4200 16 6 1.9953 -0.8200 -3.6454 17 6 3.5141 -1.0136 -3.6493 18 6 3.9383 -1.6967 -2.3462 19 6 3.4794 -0.8480 -1.1583 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6376 -1.7338 1.2740 24 1 3.1289 -0.7634 1.2254 25 1 1.9205 1.0741 2.4341 26 1 0.4989 0.0110 2.5645 27 1 2.2409 -0.2943 6.9215 28 1 2.0741 0.9815 -2.4665 29 1 0.5116 0.1314 -2.4065 30 1 1.6931 -0.2952 -4.5518 31 1 1.5046 -1.7925 -3.6067 32 1 3.7998 -1.6366 -4.4968 33 1 4.0048 -0.0436 -3.7285 34 1 3.4791 -2.6834 -2.2863 35 1 5.0234 -1.7978 -2.3248 36 1 3.9507 0.1335 -1.2107 37 1 3.7662 -1.3394 -0.2286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259630316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = -40.387837 kcal Electronic energy + Delta-G solvation = -14506.893556 eV Core-core repulsion = 12282.255193 eV Total energy + Delta-G solvation = -2224.638363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27912 -36.86198 -34.89974 -32.82818 -31.88156 -30.18657 -27.33548 -25.17798 -23.82263 -22.75382 -20.85685 -20.56355 -18.94954 -17.29570 -16.20098 -16.08914 -15.83589 -15.14300 -14.85084 -14.72977 -14.46282 -14.31372 -13.98720 -13.58094 -13.26508 -12.92198 -12.63385 -12.38362 -12.24219 -12.06982 -11.79371 -11.63071 -11.61488 -11.39006 -11.34016 -11.08652 -10.86144 -10.74133 -9.20353 -8.29920 -6.33970 1.34772 1.36823 1.48936 2.35747 2.95087 3.05338 3.88824 3.93251 3.98841 4.15991 4.17654 4.38134 4.45980 4.51250 4.60210 4.68608 4.72969 4.80964 4.87402 4.94081 4.96618 5.05193 5.07519 5.13080 5.18627 5.24821 5.28564 5.40259 5.48652 5.52379 5.63041 5.66520 6.19115 6.29402 6.32138 6.74083 7.30463 8.87248 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053058 B = 0.006727 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.596819 B = 4161.089178 C = 4522.085029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.088 4.088 5 C -0.006 4.006 6 C -0.533 4.533 7 H 0.028 0.972 8 C 0.003 3.997 9 N -0.953 5.953 10 Si 0.952 3.048 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.247 1.247 14 N -0.540 5.540 15 C 0.048 3.952 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.113 4.113 19 C 0.046 3.954 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.024 0.976 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 2.841 -20.225 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.126 4.126 5 C -0.044 4.044 6 C -0.571 4.571 7 H 0.046 0.954 8 C -0.193 4.193 9 N -0.594 5.594 10 Si 0.774 3.226 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.170 1.170 14 N -0.265 5.265 15 C -0.079 4.079 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.082 4.082 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.265 2.385 -20.066 20.334 hybrid contribution 0.298 1.088 0.975 1.491 sum -1.967 3.473 -19.091 19.503 Atomic orbital electron populations 1.21849 0.93448 1.02426 1.01872 1.21602 0.96524 0.94668 0.89506 0.95263 1.21434 0.99375 0.98827 0.92942 1.19523 0.96380 0.95597 0.92921 1.21515 1.29853 1.13836 0.91912 0.95374 1.26045 0.97449 1.00554 0.95286 1.70077 1.46989 1.43362 0.98954 0.85637 0.79197 0.79313 0.78405 1.18829 1.20905 1.17049 1.61977 1.11594 1.51020 1.01897 1.22247 1.01018 0.94973 0.89697 1.21572 0.96117 1.00615 0.96624 1.21575 0.96007 1.00672 0.97304 1.21573 1.00680 0.99024 0.93758 1.22198 0.87599 0.98631 0.99774 0.92254 0.92500 0.91046 0.93274 0.93578 0.96730 0.95723 0.92490 0.95580 0.89886 0.89842 0.91572 0.90361 0.92323 0.91733 0.90740 0.95750 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.74 71.98 0.63 -3.45 16 2 C 0.09 2.82 2.17 44.92 0.10 2.92 16 3 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.09 -3.64 4.31 30.60 0.13 -3.51 16 5 C -0.01 -0.31 3.62 29.85 0.11 -0.20 16 6 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 7 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 8 C 0.00 0.18 5.47 84.65 0.46 0.65 16 9 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 10 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 14 N -0.54 -15.68 4.53 -871.13 -3.94 -19.63 16 15 C 0.05 1.11 5.26 86.32 0.45 1.56 16 16 C -0.11 -2.06 6.09 30.64 0.19 -1.87 16 17 C -0.12 -2.14 6.00 30.67 0.18 -1.96 16 18 C -0.11 -2.50 6.10 30.65 0.19 -2.31 16 19 C 0.05 1.30 5.08 86.33 0.44 1.74 16 20 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.06 1.76 6.60 -2.39 -0.02 1.74 16 22 H 0.07 1.71 6.33 -2.39 -0.02 1.69 16 23 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 1.97 6.04 -2.38 -0.01 1.96 16 25 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 26 H 0.02 1.14 6.16 -2.39 -0.01 1.13 16 27 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 28 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.08 1.78 6.08 -2.39 -0.01 1.76 16 30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 2.09 5.80 -2.38 -0.01 2.08 16 Total: -1.00 -66.08 279.29 2.32 -63.76 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.95 Total: 7.84 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.13 Total: -38.03 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -3.64 Total: -80.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -66.08 2.32 -63.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.370 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds