Wall clock time and date at job start Sun Mar 29 2020 21:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36936 * 120.00131 * 2 1 4 4 H 1.08001 * 120.00095 * 203.04939 * 3 2 1 5 5 C 1.38812 * 120.00151 * 23.04434 * 3 2 1 6 6 N 1.31623 * 119.99766 * 12.93200 * 5 3 2 7 7 Si 1.86794 * 120.00301 * 192.92666 * 5 3 2 8 8 H 1.48502 * 109.46917 * 90.00095 * 7 5 3 9 9 H 1.48498 * 109.47335 * 209.99697 * 7 5 3 10 10 H 1.48499 * 109.47155 * 330.00187 * 7 5 3 11 11 C 1.46504 * 120.00096 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46828 * 89.99833 * 11 2 1 13 13 C 1.50706 * 109.46540 * 180.02562 * 12 11 2 14 14 C 1.33638 * 122.74469 * 124.73741 * 13 12 11 15 15 S 1.76197 * 107.92314 * 179.97438 * 14 13 12 16 16 C 1.70981 * 90.28055 * 0.27435 * 15 14 13 17 17 N 1.29021 * 110.16671 * 359.83642 * 16 15 14 18 18 H 1.09000 * 109.47742 * 275.12397 * 1 2 3 19 19 H 1.09002 * 109.47250 * 35.12001 * 1 2 3 20 20 H 1.08998 * 109.47549 * 155.12114 * 1 2 3 21 21 H 0.97004 * 119.99977 * 180.02562 * 6 5 3 22 22 H 1.09000 * 109.46800 * 330.00323 * 11 2 1 23 23 H 1.08990 * 109.47148 * 210.00362 * 11 2 1 24 24 H 1.09000 * 109.47029 * 60.00631 * 12 11 2 25 25 H 1.08999 * 109.47325 * 299.99731 * 12 11 2 26 26 H 1.07999 * 126.04339 * 0.03127 * 14 13 12 27 27 H 1.08002 * 124.91466 * 179.84120 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3159 4.0073 0.1456 8 1 1.7988 4.5533 -1.1349 9 1 1.9759 4.9363 1.2530 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2054 -3.0165 -1.4411 14 6 2.7666 -4.1044 -2.0812 15 16 3.9388 -5.3945 -1.8243 16 6 4.8984 -4.3450 -0.8750 17 7 4.3473 -3.1805 -0.8042 18 1 -0.3634 0.0918 1.0235 19 1 -0.3634 0.8406 -0.5912 20 1 -0.3634 -0.9323 -0.4323 21 1 -0.0154 3.0663 1.4744 22 1 1.6083 -2.0281 0.5147 23 1 3.1498 -1.1382 0.5143 24 1 3.0416 -0.9516 -1.9559 25 1 1.5000 -1.8416 -1.9555 26 1 1.8549 -4.1795 -2.6554 27 1 5.8309 -4.6173 -0.4031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259650976.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:53 Heat of formation + Delta-G solvation = 65.528218 kcal Electronic energy + Delta-G solvation = -11725.924087 eV Core-core repulsion = 9611.539360 eV Total energy + Delta-G solvation = -2114.384727 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65526 -35.68479 -32.41822 -30.63768 -28.26529 -25.78533 -24.97813 -23.40787 -20.47614 -19.34573 -17.66143 -16.58635 -15.61479 -14.88940 -14.40066 -13.62342 -13.60564 -13.13777 -12.92322 -12.32700 -12.25545 -11.27879 -11.06671 -10.82813 -10.76820 -10.40768 -10.16857 -9.79468 -9.77018 -9.45710 -9.35090 -8.66489 -8.44761 -6.66684 -5.65129 -3.11843 0.86220 1.52095 1.84091 3.03521 3.43381 3.49261 3.51303 4.40861 4.56903 5.26316 5.35092 5.47230 5.53814 5.81111 6.02290 6.24901 6.32734 6.51596 6.80042 6.85693 7.06192 7.43220 7.79065 7.88652 7.93766 8.47711 9.31557 9.94818 10.44008 11.39751 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.063188 B = 0.006496 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.012622 B = 4309.377594 C = 4567.075961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.162 3.838 12 C -0.070 4.070 13 C 0.087 3.913 14 C -0.261 4.261 15 S 0.077 5.923 16 C 0.024 3.976 17 N -0.458 5.458 18 H 0.031 0.969 19 H 0.040 0.960 20 H -0.003 1.003 21 H 0.251 0.749 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.174 0.826 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -14.034 -5.933 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.034 3.966 12 C -0.113 4.113 13 C -0.045 4.045 14 C -0.399 4.399 15 S 0.328 5.672 16 C -0.275 4.275 17 N -0.171 5.171 18 H 0.049 0.951 19 H 0.059 0.941 20 H 0.015 0.985 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.192 0.808 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.400 -14.501 -5.824 16.533 hybrid contribution -0.071 1.630 -0.175 1.641 sum 5.329 -12.871 -5.999 15.167 Atomic orbital electron populations 1.20796 0.82750 0.95273 0.99475 1.43955 1.01845 1.00795 1.85970 1.19235 0.98272 0.85559 1.35113 0.91304 1.25030 0.97962 0.98529 0.98282 1.70079 1.19548 1.27068 1.38801 0.86243 0.78826 0.84140 0.77306 1.21569 1.21796 1.20440 1.20602 0.96532 0.87962 0.91531 1.21103 0.97497 0.89552 1.03111 1.20754 0.91355 0.97818 0.94563 1.26842 1.06220 0.95461 1.11415 1.83825 1.16656 1.18456 1.48305 1.28435 1.04630 0.91724 1.02684 1.66158 1.09861 1.21103 1.20011 0.95105 0.94112 0.98466 0.93841 0.94985 0.92551 0.90158 0.91128 0.80814 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 8.98 59.84 0.54 4.65 15 2 N -0.60 -15.87 2.92 -181.12 -0.53 -16.40 15 3 C -0.25 -7.19 9.65 -15.06 -0.15 -7.34 15 4 H 0.07 1.93 7.86 -52.49 -0.41 1.52 15 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 15 6 N -0.91 -27.29 10.71 55.49 0.59 -26.69 15 7 Si 0.90 22.44 29.57 -169.99 -5.03 17.41 15 8 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 11 C 0.16 3.58 5.55 -4.04 -0.02 3.56 15 12 C -0.07 -1.30 6.03 -27.88 -0.17 -1.47 15 13 C 0.09 1.43 6.08 -84.23 -0.51 0.92 15 14 C -0.26 -3.52 11.07 29.12 0.32 -3.20 15 15 S 0.08 0.84 23.22 -107.50 -2.50 -1.66 15 16 C 0.02 0.30 12.23 51.58 0.63 0.93 15 17 N -0.46 -7.58 10.34 -11.90 -0.12 -7.71 15 18 H 0.03 0.85 7.34 -51.93 -0.38 0.46 15 19 H 0.04 1.09 7.34 -51.93 -0.38 0.71 15 20 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 15 21 H 0.25 7.28 8.31 -40.82 -0.34 6.94 15 22 H 0.03 0.68 8.07 -51.93 -0.42 0.26 15 23 H 0.06 1.32 7.97 -51.93 -0.41 0.90 15 24 H 0.08 1.61 8.14 -51.93 -0.42 1.18 15 25 H 0.07 1.24 8.03 -51.93 -0.42 0.83 15 26 H 0.17 1.98 8.06 -52.49 -0.42 1.56 15 27 H 0.20 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 249.99 15.07 3.77 3.77 Total: -1.00 -31.58 249.99 -6.51 -38.08 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: -3.25 Total: -4.78 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 0.55 Total: -2.04 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.06 Total: -50.80 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.58 -6.51 -38.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650976.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.612 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds