Wall clock time and date at job start Sun Mar 29 2020 21:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36936 * 120.00131 * 2 1 4 4 H 1.08001 * 120.00095 * 203.04939 * 3 2 1 5 5 C 1.38812 * 120.00151 * 23.04434 * 3 2 1 6 6 N 1.31623 * 119.99766 * 12.93200 * 5 3 2 7 7 Si 1.86794 * 120.00301 * 192.92666 * 5 3 2 8 8 H 1.48502 * 109.46917 * 90.00095 * 7 5 3 9 9 H 1.48498 * 109.47335 * 209.99697 * 7 5 3 10 10 H 1.48499 * 109.47155 * 330.00187 * 7 5 3 11 11 C 1.46504 * 120.00096 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46828 * 89.99833 * 11 2 1 13 13 C 1.50706 * 109.46540 * 180.02562 * 12 11 2 14 14 C 1.33638 * 122.74469 * 124.73741 * 13 12 11 15 15 S 1.76197 * 107.92314 * 179.97438 * 14 13 12 16 16 C 1.70981 * 90.28055 * 0.27435 * 15 14 13 17 17 N 1.29021 * 110.16671 * 359.83642 * 16 15 14 18 18 H 1.09000 * 109.47742 * 275.12397 * 1 2 3 19 19 H 1.09002 * 109.47250 * 35.12001 * 1 2 3 20 20 H 1.08998 * 109.47549 * 155.12114 * 1 2 3 21 21 H 0.97004 * 119.99977 * 180.02562 * 6 5 3 22 22 H 1.09000 * 109.46800 * 330.00323 * 11 2 1 23 23 H 1.08990 * 109.47148 * 210.00362 * 11 2 1 24 24 H 1.09000 * 109.47029 * 60.00631 * 12 11 2 25 25 H 1.08999 * 109.47325 * 299.99731 * 12 11 2 26 26 H 1.07999 * 126.04339 * 0.03127 * 14 13 12 27 27 H 1.08002 * 124.91466 * 179.84120 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3159 4.0073 0.1456 8 1 1.7988 4.5533 -1.1349 9 1 1.9759 4.9363 1.2530 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2054 -3.0165 -1.4411 14 6 2.7666 -4.1044 -2.0812 15 16 3.9388 -5.3945 -1.8243 16 6 4.8984 -4.3450 -0.8750 17 7 4.3473 -3.1805 -0.8042 18 1 -0.3634 0.0918 1.0235 19 1 -0.3634 0.8406 -0.5912 20 1 -0.3634 -0.9323 -0.4323 21 1 -0.0154 3.0663 1.4744 22 1 1.6083 -2.0281 0.5147 23 1 3.1498 -1.1382 0.5143 24 1 3.0416 -0.9516 -1.9559 25 1 1.5000 -1.8416 -1.9555 26 1 1.8549 -4.1795 -2.6554 27 1 5.8309 -4.6173 -0.4031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259650976.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:53 Heat of formation + Delta-G solvation = 44.901583 kcal Electronic energy + Delta-G solvation = -11726.818525 eV Core-core repulsion = 9611.539360 eV Total energy + Delta-G solvation = -2115.279165 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.77420 -37.63100 -34.16904 -32.34520 -29.74537 -27.90717 -26.23434 -25.01790 -22.38692 -20.45341 -18.85503 -18.57026 -17.05219 -16.53183 -15.85807 -15.50185 -15.14916 -14.60411 -14.15736 -13.98046 -13.93885 -12.95460 -12.83019 -12.73812 -12.55892 -12.17206 -12.13212 -11.86882 -11.58883 -10.66761 -10.49407 -10.35521 -9.68330 -8.77153 -7.82744 -5.32978 -0.13248 0.57896 0.83899 1.46092 1.47257 1.56797 1.90457 2.51274 3.29820 3.40035 3.71597 4.20436 4.31881 4.47417 4.52807 4.73257 4.76989 4.84203 5.14780 5.22067 5.27352 5.44849 5.62962 5.69787 6.33066 6.90638 7.15284 7.86335 8.30291 9.20252 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.063188 B = 0.006496 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.012622 B = 4309.377594 C = 4567.075961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.622 5.622 3 C -0.264 4.264 4 H 0.066 0.934 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.270 1.270 11 C 0.167 3.833 12 C -0.052 4.052 13 C 0.054 3.946 14 C -0.262 4.262 15 S 0.161 5.839 16 C 0.016 3.984 17 N -0.508 5.508 18 H 0.004 0.996 19 H 0.017 0.983 20 H 0.034 0.966 21 H 0.249 0.751 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.194 0.806 27 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -15.769 -6.990 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.345 5.345 3 C -0.394 4.394 4 H 0.084 0.916 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.210 1.210 9 H -0.219 1.219 10 H -0.195 1.195 11 C 0.040 3.960 12 C -0.095 4.095 13 C -0.077 4.077 14 C -0.401 4.401 15 S 0.413 5.587 16 C -0.282 4.282 17 N -0.222 5.222 18 H 0.022 0.978 19 H 0.036 0.964 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.211 0.789 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.251 -16.286 -6.899 18.759 hybrid contribution -0.271 1.962 0.135 1.986 sum 5.979 -14.324 -6.764 16.931 Atomic orbital electron populations 1.20560 0.82553 0.96119 0.97685 1.44212 1.02299 1.01647 1.86363 1.19497 0.98391 0.86836 1.34666 0.91642 1.25824 0.98700 1.01975 0.98380 1.70242 1.20858 1.27670 1.39906 0.85203 0.78317 0.79568 0.76994 1.20988 1.21886 1.19528 1.20626 0.95027 0.86460 0.93879 1.20657 0.98147 0.90770 0.99924 1.20391 0.92389 0.97605 0.97320 1.27153 1.07240 0.95826 1.09894 1.83564 1.13862 1.15425 1.45892 1.28977 1.05601 0.91171 1.02413 1.66110 1.10702 1.23573 1.21856 0.97803 0.96380 0.94791 0.94188 0.94291 0.94605 0.92373 0.90066 0.78868 0.75669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 8.98 127.77 1.15 10.20 15 2 N -0.62 -33.24 2.92 -726.95 -2.12 -35.37 15 3 C -0.26 -15.32 9.65 84.03 0.81 -14.51 15 4 H 0.07 3.76 7.86 -2.91 -0.02 3.73 15 5 C -0.05 -3.15 5.10 84.86 0.43 -2.72 15 6 N -0.94 -57.55 10.71 21.65 0.23 -57.32 15 7 Si 0.97 46.69 29.57 68.60 2.03 48.72 15 8 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 11 C 0.17 7.47 5.55 86.38 0.48 7.95 15 12 C -0.05 -1.96 6.03 29.85 0.18 -1.78 15 13 C 0.05 1.74 6.08 41.52 0.25 1.99 15 14 C -0.26 -6.37 11.07 66.78 0.74 -5.63 15 15 S 0.16 2.92 23.22 -56.49 -1.31 1.61 15 16 C 0.02 0.36 12.23 130.66 1.60 1.95 15 17 N -0.51 -16.32 10.34 -191.55 -1.98 -18.30 15 18 H 0.00 0.21 7.34 -2.39 -0.02 0.19 15 19 H 0.02 0.97 7.34 -2.39 -0.02 0.95 15 20 H 0.03 1.46 8.03 -2.39 -0.02 1.44 15 21 H 0.25 14.70 8.31 -92.71 -0.77 13.93 15 22 H 0.04 1.66 8.07 -2.39 -0.02 1.64 15 23 H 0.04 1.72 7.97 -2.39 -0.02 1.70 15 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.08 2.79 8.03 -2.39 -0.02 2.77 15 26 H 0.19 3.76 8.06 -2.91 -0.02 3.73 15 27 H 0.23 3.25 8.06 -2.91 -0.02 3.22 15 Total: -1.00 -68.82 249.99 3.63 -65.18 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: 1.15 Total: -1.98 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.64 Total: -2.55 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -3.87 Total: -110.99 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.31 Total: 1.61 kcal Total: -68.82 3.63 -65.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650976.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.086 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds