Wall clock time and date at job start Sun Mar 29 2020 21:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 119.99657 * 2 1 4 4 C 1.38221 * 120.06813 * 180.02562 * 3 2 1 5 5 C 1.38248 * 120.07170 * 0.04198 * 4 3 2 6 6 C 1.50697 * 120.00179 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 99.99834 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.38370 * 120.00365 * 0.23274 * 5 4 3 16 16 F 1.35092 * 120.03797 * 179.74726 * 15 5 4 17 17 C 1.38365 * 120.00391 * 180.02562 * 2 1 3 18 18 F 1.35105 * 120.03546 * 359.97327 * 17 2 1 19 19 H 1.09003 * 109.47377 * 90.00339 * 1 2 3 20 20 H 1.09006 * 109.47209 * 210.00207 * 1 2 3 21 21 H 1.09001 * 109.47414 * 329.99951 * 1 2 3 22 22 H 1.08002 * 119.96763 * 0.02562 * 3 2 1 23 23 H 1.07998 * 119.95972 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.47205 * 339.99927 * 6 5 4 25 25 H 1.08997 * 109.47395 * 220.00419 * 6 5 4 26 26 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1991 -0.0005 5 6 4.2746 0.0036 -0.0019 6 6 5.7816 0.0073 -0.0031 7 6 6.2856 -0.2392 1.3955 8 1 5.5848 -0.3844 2.2043 9 6 7.6416 -0.2792 1.6427 10 7 8.4950 -0.1077 0.6568 11 14 8.2663 -0.5854 3.3762 12 1 8.4358 -2.0450 3.5907 13 1 9.5726 0.0967 3.5593 14 1 7.2872 -0.0514 4.3568 15 6 3.5858 -1.1965 -0.0077 16 9 4.2635 -2.3651 -0.0142 17 6 2.1988 -1.1982 -0.0005 18 9 1.5241 -2.3687 -0.0005 19 1 -0.3634 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.6576 2.1324 0.0004 23 1 4.1185 2.1355 -0.0001 24 1 6.1423 0.9742 -0.3542 25 1 6.1464 -0.7785 -0.6646 26 1 9.4488 -0.1355 0.8307 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016270.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:22 Heat of formation + Delta-G solvation = -85.578325 kcal Electronic energy + Delta-G solvation = -13580.323961 eV Core-core repulsion = 10873.253625 eV Total energy + Delta-G solvation = -2707.070336 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.86563 -47.85559 -38.62304 -33.93769 -32.20519 -29.76675 -29.02937 -25.66981 -22.87767 -22.30261 -20.63492 -17.08223 -16.56825 -16.44076 -16.16367 -15.67874 -14.58702 -14.30209 -14.08954 -13.83286 -13.25072 -12.79961 -12.67846 -12.37833 -12.11540 -11.47986 -11.41259 -11.11956 -10.92175 -10.60636 -10.57298 -9.71019 -9.52301 -8.47526 -8.21386 -7.95364 -6.09471 -4.13776 1.47003 1.57745 3.29483 3.35406 3.39043 3.91066 4.32913 4.41926 4.81047 5.05261 5.25775 5.29431 5.39100 5.55237 5.63796 5.77565 5.92138 6.29768 6.39293 6.52906 6.67893 6.82178 7.31687 7.45087 7.56381 7.84685 8.20380 8.89304 9.50267 11.00719 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.043844 B = 0.008654 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.472271 B = 3234.729383 C = 3426.348186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.105 4.105 5 C -0.047 4.047 6 C 0.049 3.951 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.069 3.931 16 F -0.124 7.124 17 C 0.055 3.945 18 F -0.138 7.138 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.130 0.870 23 H 0.135 0.865 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 2.129 -1.661 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.048 4.048 6 C 0.012 3.988 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.049 3.951 16 F -0.102 7.102 17 C 0.035 3.965 18 F -0.117 7.117 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.147 0.853 23 H 0.153 0.847 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.216 2.037 -1.701 12.501 hybrid contribution 0.489 -0.656 0.948 1.252 sum -11.726 1.381 -0.753 11.831 Atomic orbital electron populations 1.20624 0.90323 1.02911 1.02340 1.19573 0.96559 0.91269 1.05228 1.20873 0.94170 0.96587 1.00838 1.21064 0.93288 0.98038 0.99957 1.20769 1.00374 0.90054 0.93642 1.18360 0.82725 0.99198 0.98499 1.20970 0.91638 1.49861 0.92789 0.92466 1.24981 0.96756 0.94946 0.97395 1.69950 1.02297 1.49544 1.31291 0.86493 0.78204 0.78508 0.84288 1.20466 1.21059 1.19741 1.17595 0.87445 0.83117 1.06988 1.91501 1.79840 1.45113 1.93779 1.17543 0.88359 0.81792 1.08782 1.91436 1.80002 1.45902 1.94357 0.91225 0.91563 0.91153 0.85255 0.84693 0.94414 0.94540 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.83 36.00 0.35 -0.87 15 2 C -0.13 -1.94 5.88 -104.57 -0.62 -2.56 15 3 C -0.11 -1.58 9.70 -39.58 -0.38 -1.96 15 4 C -0.11 -1.86 9.67 -39.58 -0.38 -2.24 15 5 C -0.05 -1.02 5.08 -104.57 -0.53 -1.56 15 6 C 0.05 1.25 4.83 -29.04 -0.14 1.11 15 7 C -0.51 -14.46 9.09 -34.44 -0.31 -14.77 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 10 N -0.89 -26.25 13.29 55.43 0.74 -25.51 15 11 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 15 C 0.07 1.47 7.24 -39.36 -0.29 1.19 15 16 F -0.12 -2.91 16.57 2.25 0.04 -2.87 15 17 C 0.06 1.03 7.25 -39.36 -0.29 0.74 15 18 F -0.14 -2.53 16.39 2.25 0.04 -2.49 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.07 0.77 7.64 -51.93 -0.40 0.37 15 21 H 0.07 0.67 8.09 -51.93 -0.42 0.25 15 22 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 23 H 0.14 2.17 8.04 -52.49 -0.42 1.75 15 24 H 0.04 0.97 8.00 -51.93 -0.42 0.56 15 25 H 0.04 1.01 7.94 -51.93 -0.41 0.60 15 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 LS Contribution 243.09 15.07 3.66 3.66 Total: -1.00 -29.85 243.09 -5.68 -35.53 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -2.45 Total: -5.66 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.68 Total: -19.27 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.07 Total: -5.36 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.85 -5.68 -35.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016270.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.046 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds