Wall clock time and date at job start Sun Mar 29 2020 21:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 119.99657 * 2 1 4 4 C 1.38221 * 120.06813 * 180.02562 * 3 2 1 5 5 C 1.38248 * 120.07170 * 0.04198 * 4 3 2 6 6 C 1.50697 * 120.00179 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 99.99834 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.38370 * 120.00365 * 0.23274 * 5 4 3 16 16 F 1.35092 * 120.03797 * 179.74726 * 15 5 4 17 17 C 1.38365 * 120.00391 * 180.02562 * 2 1 3 18 18 F 1.35105 * 120.03546 * 359.97327 * 17 2 1 19 19 H 1.09003 * 109.47377 * 90.00339 * 1 2 3 20 20 H 1.09006 * 109.47209 * 210.00207 * 1 2 3 21 21 H 1.09001 * 109.47414 * 329.99951 * 1 2 3 22 22 H 1.08002 * 119.96763 * 0.02562 * 3 2 1 23 23 H 1.07998 * 119.95972 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.47205 * 339.99927 * 6 5 4 25 25 H 1.08997 * 109.47395 * 220.00419 * 6 5 4 26 26 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1991 -0.0005 5 6 4.2746 0.0036 -0.0019 6 6 5.7816 0.0073 -0.0031 7 6 6.2856 -0.2392 1.3955 8 1 5.5848 -0.3844 2.2043 9 6 7.6416 -0.2792 1.6427 10 7 8.4950 -0.1077 0.6568 11 14 8.2663 -0.5854 3.3762 12 1 8.4358 -2.0450 3.5907 13 1 9.5726 0.0967 3.5593 14 1 7.2872 -0.0514 4.3568 15 6 3.5858 -1.1965 -0.0077 16 9 4.2635 -2.3651 -0.0142 17 6 2.1988 -1.1982 -0.0005 18 9 1.5241 -2.3687 -0.0005 19 1 -0.3634 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.6576 2.1324 0.0004 23 1 4.1185 2.1355 -0.0001 24 1 6.1423 0.9742 -0.3542 25 1 6.1464 -0.7785 -0.6646 26 1 9.4488 -0.1355 0.8307 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016270.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:21 Heat of formation + Delta-G solvation = -102.403355 kcal Electronic energy + Delta-G solvation = -13581.053549 eV Core-core repulsion = 10873.253625 eV Total energy + Delta-G solvation = -2707.799924 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.39537 -49.47447 -40.04130 -35.76070 -33.94432 -31.18635 -30.66729 -27.31589 -24.66480 -23.72777 -22.17152 -18.66020 -18.59528 -17.94833 -17.72027 -17.24572 -16.53744 -15.93894 -15.41836 -15.36478 -14.50825 -14.27872 -14.20820 -14.12104 -13.58201 -13.18021 -12.88968 -12.64334 -12.47887 -12.43704 -12.33058 -11.57638 -11.51043 -10.65329 -9.65590 -9.46914 -8.25280 -6.38480 0.03690 0.15999 1.37399 1.39349 1.50169 2.34687 2.53714 2.89852 3.06794 3.46222 3.75837 3.89719 4.11618 4.25686 4.56213 4.82615 4.84348 4.92954 5.07666 5.21220 5.26775 5.27252 5.36503 5.65687 5.67421 5.91354 6.09403 6.71651 7.29933 8.84716 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.043844 B = 0.008654 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.472271 B = 3234.729383 C = 3426.348186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.107 4.107 3 C -0.084 4.084 4 C -0.103 4.103 5 C -0.080 4.080 6 C 0.058 3.942 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.263 1.263 15 C 0.033 3.967 16 F -0.150 7.150 17 C 0.045 3.955 18 F -0.139 7.139 19 H 0.090 0.910 20 H 0.064 0.936 21 H 0.102 0.898 22 H 0.183 0.817 23 H 0.150 0.850 24 H 0.026 0.974 25 H -0.002 1.002 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 3.698 -0.713 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.101 4.101 4 C -0.121 4.121 5 C -0.081 4.081 6 C 0.021 3.979 7 C -0.570 4.570 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.789 3.211 12 H -0.203 1.203 13 H -0.199 1.199 14 H -0.187 1.187 15 C 0.013 3.987 16 F -0.128 7.128 17 C 0.025 3.975 18 F -0.118 7.118 19 H 0.108 0.892 20 H 0.083 0.917 21 H 0.121 0.879 22 H 0.201 0.799 23 H 0.168 0.832 24 H 0.045 0.955 25 H 0.017 0.983 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.610 3.608 -0.757 15.068 hybrid contribution 1.117 -1.108 0.595 1.682 sum -13.493 2.500 -0.162 13.724 Atomic orbital electron populations 1.20792 0.86773 1.04512 1.04097 1.20174 0.98926 0.89950 1.01745 1.21388 0.92734 0.98427 0.97571 1.21299 0.94944 0.96898 0.98925 1.20489 0.98128 0.92000 0.97512 1.18047 0.86211 0.96959 0.96692 1.21288 0.92057 1.49844 0.93827 0.93020 1.25892 0.96957 0.94518 1.01711 1.70064 1.02698 1.50373 1.33514 0.85441 0.78031 0.78365 0.79230 1.20287 1.19897 1.18675 1.17970 0.88929 0.82326 1.09448 1.91418 1.80659 1.46440 1.94314 1.17737 0.87287 0.83049 1.09470 1.91427 1.79660 1.46299 1.94434 0.89189 0.91721 0.87895 0.79941 0.83239 0.95541 0.98345 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.83 71.23 0.70 -1.19 15 2 C -0.11 -2.92 5.88 -19.83 -0.12 -3.04 15 3 C -0.08 -2.10 9.70 22.27 0.22 -1.88 15 4 C -0.10 -3.45 9.67 22.27 0.22 -3.23 15 5 C -0.08 -3.56 5.08 -19.83 -0.10 -3.66 15 6 C 0.06 3.13 4.83 29.10 0.14 3.27 15 7 C -0.53 -30.94 9.09 25.60 0.23 -30.71 15 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 15 9 C 0.01 0.46 5.46 84.66 0.46 0.92 15 10 N -0.93 -56.13 13.29 21.45 0.28 -55.85 15 11 Si 0.97 44.84 29.54 68.60 2.03 46.86 15 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 15 15 C 0.03 1.47 7.24 22.41 0.16 1.63 15 16 F -0.15 -7.46 16.57 44.97 0.75 -6.72 15 17 C 0.04 1.62 7.25 22.41 0.16 1.78 15 18 F -0.14 -5.00 16.39 44.97 0.74 -4.27 15 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 20 H 0.06 1.23 7.64 -2.38 -0.02 1.21 15 21 H 0.10 1.26 8.09 -2.39 -0.02 1.24 15 22 H 0.18 2.75 8.06 -2.91 -0.02 2.73 15 23 H 0.15 4.51 8.04 -2.91 -0.02 4.48 15 24 H 0.03 1.44 8.00 -2.38 -0.02 1.42 15 25 H 0.00 -0.10 7.94 -2.39 -0.02 -0.12 15 26 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 Total: -1.00 -67.97 243.09 7.05 -60.92 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 1.19 Total: -4.83 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 2.07 Total: -36.12 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.28 Total: -55.85 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 1.48 Total: -10.98 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -67.97 7.05 -60.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016270.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.486 kcal (2) G-P(sol) polarization free energy of solvation -67.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds