Wall clock time and date at job start Sun Mar 29 2020 21:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46891 * 109.47387 * 2 1 4 4 C 1.46904 * 110.99690 * 66.05016 * 3 2 1 5 5 C 1.46903 * 111.00497 * 190.00355 * 3 2 1 6 6 C 1.52998 * 109.47667 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47232 * 180.02562 * 6 5 3 8 8 C 1.52992 * 109.47296 * 59.99748 * 7 6 5 9 9 C 1.50700 * 109.47257 * 59.99902 * 8 7 6 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.53003 * 109.47195 * 299.99941 * 8 7 6 18 18 C 1.52994 * 109.46903 * 59.99655 * 5 3 2 19 19 H 1.08999 * 109.47378 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.46683 * 299.99462 * 1 2 3 21 21 H 1.08998 * 109.47054 * 59.99118 * 1 2 3 22 22 H 1.09006 * 109.46683 * 240.00538 * 2 1 3 23 23 H 1.08998 * 109.47054 * 120.00882 * 2 1 3 24 24 H 1.09001 * 109.46897 * 183.95505 * 4 3 2 25 25 H 1.08996 * 109.47187 * 303.94613 * 4 3 2 26 26 H 1.08991 * 109.47224 * 63.95379 * 4 3 2 27 27 H 1.09005 * 109.46638 * 300.00570 * 5 3 2 28 28 H 1.08998 * 109.46987 * 59.99359 * 6 5 3 29 29 H 1.09005 * 109.46648 * 300.00005 * 6 5 3 30 30 H 1.08996 * 109.46678 * 299.99615 * 7 6 5 31 31 H 1.09004 * 109.46869 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47279 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47453 * 180.02562 * 17 8 7 35 35 H 1.08996 * 109.47248 * 300.00419 * 17 8 7 36 36 H 1.08999 * 109.47824 * 300.01002 * 18 5 3 37 37 H 1.09005 * 109.46726 * 60.00969 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 1.2534 5 6 3.4686 1.4311 -0.2382 6 6 3.9407 2.8864 -0.2305 7 6 5.4495 2.9344 -0.4793 8 6 5.7628 2.3038 -1.8375 9 6 5.0502 3.0688 -2.9229 10 1 4.4350 3.9194 -2.6692 11 6 5.1828 2.6821 -4.2397 12 7 5.9355 1.6489 -4.5491 13 14 4.3000 3.6307 -5.5852 14 1 3.5281 4.7456 -4.9798 15 1 5.2967 4.1790 -6.5397 16 1 3.3729 2.7212 -6.3054 17 6 5.2908 0.8485 -1.8452 18 6 3.7825 0.7997 -1.5960 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5140 0.8899 24 1 1.9825 3.1097 1.1989 25 1 0.5921 2.0179 1.4053 26 1 2.1771 1.5789 2.0859 27 1 3.9837 0.8781 0.5473 28 1 3.7170 3.3358 0.7370 29 1 3.4255 3.4396 -1.0159 30 1 5.9649 2.3811 0.3058 31 1 5.7857 3.9713 -0.4742 32 1 6.8378 2.3377 -2.0145 33 1 6.0285 1.3767 -5.4754 34 1 5.5144 0.3990 -2.8127 35 1 5.8062 0.2952 -1.0602 36 1 3.4462 -0.2371 -1.6012 37 1 3.2674 1.3527 -2.3816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:59 Heat of formation + Delta-G solvation = -14.862977 kcal Electronic energy + Delta-G solvation = -15100.513156 eV Core-core repulsion = 12876.981634 eV Total energy + Delta-G solvation = -2223.531522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.68911 -35.81155 -32.31173 -30.56057 -29.82423 -28.05520 -25.63813 -24.44611 -21.82908 -20.98703 -19.76666 -18.60562 -15.86811 -15.65533 -14.70089 -14.62124 -14.13072 -13.66328 -13.19651 -12.94299 -12.60453 -12.24115 -11.98568 -11.72689 -11.40824 -11.26886 -10.93024 -10.82245 -10.58213 -10.47763 -10.42514 -10.18419 -10.00585 -9.53972 -9.09562 -8.74822 -8.52389 -8.20371 -7.84653 -5.89141 -3.92402 3.35427 3.43735 3.48098 4.34115 4.52330 5.24370 5.41379 5.44426 5.50398 5.63866 5.70051 5.79411 5.87434 5.96256 6.11118 6.12013 6.24546 6.34502 6.39283 6.54585 6.60854 6.63409 6.77513 6.82729 6.89140 7.18117 7.28632 7.48848 7.55183 7.61429 7.76381 7.83437 8.01676 8.23420 8.57304 9.09860 9.70452 11.17073 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.009958 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.671162 B = 2811.006681 C = 3068.351965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.021 3.979 5 C 0.094 3.906 6 C -0.099 4.099 7 C -0.106 4.106 8 C 0.043 3.957 9 C -0.496 4.496 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.884 3.116 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.286 1.286 17 C -0.107 4.107 18 C -0.092 4.092 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.023 0.977 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.016 0.984 27 H 0.022 0.978 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.023 0.977 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.010 0.990 36 H 0.031 0.969 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 -2.031 8.657 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.127 4.127 5 C -0.014 4.014 6 C -0.137 4.137 7 C -0.145 4.145 8 C 0.024 3.976 9 C -0.534 4.534 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.713 3.287 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.145 4.145 18 C -0.130 4.130 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.099 0.901 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.029 0.971 36 H 0.050 0.950 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.165 -1.877 8.120 10.991 hybrid contribution -0.094 -0.012 -0.081 0.125 sum -7.258 -1.889 8.039 10.995 Atomic orbital electron populations 1.21797 0.95574 1.00873 1.02161 1.22135 0.95397 0.89958 1.00802 1.62074 1.15567 1.15017 1.33543 1.22428 1.00352 0.99793 0.90124 1.21683 0.84718 0.97363 0.97617 1.21513 0.97310 0.94985 0.99859 1.21557 0.94257 0.99622 0.99021 1.18699 0.96402 0.91945 0.90506 1.21190 1.28345 1.12947 0.90905 0.92591 1.24933 0.95431 0.95145 0.98531 1.69886 1.39368 1.26191 1.17840 0.86656 0.79574 0.80168 0.82346 1.19833 1.21316 1.21190 1.21509 0.92672 0.99399 1.00958 1.21461 0.98733 0.97259 0.95556 0.92880 0.93120 0.91883 0.90057 0.95846 0.91101 0.92008 0.96569 0.95972 0.94571 0.90347 0.95104 0.93430 0.95859 0.93322 0.88998 0.97085 0.95008 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.84 37.16 0.37 -1.46 16 2 C 0.05 0.68 5.49 -3.83 -0.02 0.66 16 3 N -0.54 -9.15 4.63 -234.89 -1.09 -10.24 16 4 C 0.02 0.31 8.91 60.07 0.54 0.84 16 5 C 0.09 1.79 1.95 -67.71 -0.13 1.66 16 6 C -0.10 -1.95 4.62 -26.73 -0.12 -2.07 16 7 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 8 C 0.04 1.07 2.58 -91.77 -0.24 0.83 16 9 C -0.50 -13.34 6.61 -34.44 -0.23 -13.57 16 10 H 0.06 1.51 6.71 -52.49 -0.35 1.16 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 12 N -0.89 -25.48 11.33 55.43 0.63 -24.85 16 13 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.11 -2.54 5.23 -26.75 -0.14 -2.68 16 18 C -0.09 -1.99 4.78 -26.76 -0.13 -2.12 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.59 6.47 -51.93 -0.34 0.25 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.08 1.29 5.83 -51.93 -0.30 0.99 16 23 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 24 H 0.07 1.02 6.23 -51.93 -0.32 0.70 16 25 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.63 6.35 -51.93 -0.33 0.30 16 29 H 0.08 1.71 6.62 -51.93 -0.34 1.36 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.09 2.44 6.08 -51.93 -0.32 2.13 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.03 0.63 6.20 -51.93 -0.32 0.31 16 37 H 0.08 1.92 7.22 -51.93 -0.37 1.55 16 LS Contribution 273.11 15.07 4.12 4.12 Total: -1.00 -27.64 273.11 -7.98 -35.62 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.27 Total: -2.37 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.35 Total: -18.76 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.46 Total: -35.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.64 -7.98 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.756 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds