Wall clock time and date at job start Sun Mar 29 2020 21:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46891 * 109.47387 * 2 1 4 4 C 1.46904 * 110.99690 * 66.05016 * 3 2 1 5 5 C 1.46903 * 111.00497 * 190.00355 * 3 2 1 6 6 C 1.52998 * 109.47667 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47232 * 180.02562 * 6 5 3 8 8 C 1.52992 * 109.47296 * 59.99748 * 7 6 5 9 9 C 1.50700 * 109.47257 * 59.99902 * 8 7 6 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.53003 * 109.47195 * 299.99941 * 8 7 6 18 18 C 1.52994 * 109.46903 * 59.99655 * 5 3 2 19 19 H 1.08999 * 109.47378 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.46683 * 299.99462 * 1 2 3 21 21 H 1.08998 * 109.47054 * 59.99118 * 1 2 3 22 22 H 1.09006 * 109.46683 * 240.00538 * 2 1 3 23 23 H 1.08998 * 109.47054 * 120.00882 * 2 1 3 24 24 H 1.09001 * 109.46897 * 183.95505 * 4 3 2 25 25 H 1.08996 * 109.47187 * 303.94613 * 4 3 2 26 26 H 1.08991 * 109.47224 * 63.95379 * 4 3 2 27 27 H 1.09005 * 109.46638 * 300.00570 * 5 3 2 28 28 H 1.08998 * 109.46987 * 59.99359 * 6 5 3 29 29 H 1.09005 * 109.46648 * 300.00005 * 6 5 3 30 30 H 1.08996 * 109.46678 * 299.99615 * 7 6 5 31 31 H 1.09004 * 109.46869 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47279 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47453 * 180.02562 * 17 8 7 35 35 H 1.08996 * 109.47248 * 300.00419 * 17 8 7 36 36 H 1.08999 * 109.47824 * 300.01002 * 18 5 3 37 37 H 1.09005 * 109.46726 * 60.00969 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 1.2534 5 6 3.4686 1.4311 -0.2382 6 6 3.9407 2.8864 -0.2305 7 6 5.4495 2.9344 -0.4793 8 6 5.7628 2.3038 -1.8375 9 6 5.0502 3.0688 -2.9229 10 1 4.4350 3.9194 -2.6692 11 6 5.1828 2.6821 -4.2397 12 7 5.9355 1.6489 -4.5491 13 14 4.3000 3.6307 -5.5852 14 1 3.5281 4.7456 -4.9798 15 1 5.2967 4.1790 -6.5397 16 1 3.3729 2.7212 -6.3054 17 6 5.2908 0.8485 -1.8452 18 6 3.7825 0.7997 -1.5960 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5140 0.8899 24 1 1.9825 3.1097 1.1989 25 1 0.5921 2.0179 1.4053 26 1 2.1771 1.5789 2.0859 27 1 3.9837 0.8781 0.5473 28 1 3.7170 3.3358 0.7370 29 1 3.4255 3.4396 -1.0159 30 1 5.9649 2.3811 0.3058 31 1 5.7857 3.9713 -0.4742 32 1 6.8378 2.3377 -2.0145 33 1 6.0285 1.3767 -5.4754 34 1 5.5144 0.3990 -2.8127 35 1 5.8062 0.2952 -1.0602 36 1 3.4462 -0.2371 -1.6012 37 1 3.2674 1.3527 -2.3816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:58 Heat of formation + Delta-G solvation = -30.864425 kcal Electronic energy + Delta-G solvation = -15101.207031 eV Core-core repulsion = 12876.981634 eV Total energy + Delta-G solvation = -2224.225397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23266 -37.37795 -34.24321 -31.96912 -31.51298 -29.61348 -27.19685 -26.19061 -23.32677 -22.58469 -21.25242 -20.43937 -17.78854 -17.16173 -16.58933 -15.92049 -15.63867 -15.15247 -14.78923 -14.59946 -14.32715 -13.57281 -13.39718 -13.17975 -13.02314 -12.84002 -12.58422 -12.39998 -12.35289 -12.12372 -12.03553 -11.80277 -11.52997 -11.43035 -10.94099 -10.64761 -10.38966 -10.27255 -9.12926 -8.00992 -6.09908 1.40312 1.43494 1.53478 2.47935 3.06519 3.27574 4.00042 4.08385 4.20139 4.37441 4.46825 4.58142 4.64514 4.65879 4.71600 4.80993 4.85121 4.94309 4.96568 5.00010 5.03664 5.11636 5.17546 5.23139 5.38007 5.44165 5.57998 5.68161 5.71743 5.76879 5.99356 6.21285 6.31508 6.35606 6.49122 6.99355 7.55492 9.04308 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.009958 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.671162 B = 2811.006681 C = 3068.351965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 N -0.553 5.553 4 C 0.021 3.979 5 C 0.102 3.898 6 C -0.091 4.091 7 C -0.102 4.102 8 C 0.037 3.963 9 C -0.501 4.501 10 H 0.052 0.948 11 C 0.012 3.988 12 N -0.920 5.920 13 Si 0.941 3.059 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.102 4.102 18 C -0.082 4.082 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.025 0.975 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.048 0.952 32 H -0.011 1.011 33 H 0.256 0.744 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.044 0.956 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -1.853 10.163 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 N -0.278 5.278 4 C -0.126 4.126 5 C -0.006 4.006 6 C -0.129 4.129 7 C -0.140 4.140 8 C 0.018 3.982 9 C -0.539 4.539 10 H 0.070 0.930 11 C -0.185 4.185 12 N -0.561 5.561 13 Si 0.768 3.232 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.141 4.141 18 C -0.120 4.120 19 H 0.090 0.910 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.696 -1.692 9.637 13.091 hybrid contribution 0.399 -0.090 -0.528 0.668 sum -8.297 -1.782 9.109 12.450 Atomic orbital electron populations 1.21746 0.93524 1.02201 1.02218 1.22198 0.97075 0.88821 1.00453 1.62023 1.13762 1.16507 1.35506 1.22486 1.01761 0.99364 0.89020 1.21449 0.86629 0.96574 0.95909 1.21415 0.95587 0.95386 1.00526 1.21468 0.95845 0.99554 0.97109 1.18707 0.94103 0.92950 0.92412 1.21419 1.27989 1.12788 0.91701 0.93002 1.25613 0.96249 0.96003 1.00636 1.70020 1.40585 1.27415 1.18084 0.85756 0.78543 0.79049 0.79852 1.19262 1.21026 1.21069 1.21362 0.94604 0.98501 0.99608 1.21279 0.96482 0.97897 0.96347 0.90999 0.91826 0.92980 0.91654 0.94880 0.91243 0.90045 0.95636 0.95351 0.91579 0.92764 0.93330 0.93280 0.99257 0.93448 0.92335 0.95740 0.93742 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.84 71.98 0.71 -2.37 16 2 C 0.04 1.17 5.49 86.31 0.47 1.64 16 3 N -0.55 -17.54 4.63 -897.06 -4.15 -21.69 16 4 C 0.02 0.54 8.91 127.69 1.14 1.68 16 5 C 0.10 3.73 1.95 44.91 0.09 3.82 16 6 C -0.09 -3.44 4.62 30.59 0.14 -3.30 16 7 C -0.10 -4.20 5.41 30.59 0.17 -4.04 16 8 C 0.04 1.85 2.58 -11.54 -0.03 1.82 16 9 C -0.50 -27.39 6.61 25.60 0.17 -27.22 16 10 H 0.05 2.83 6.71 -2.91 -0.02 2.81 16 11 C 0.01 0.70 5.30 84.66 0.45 1.15 16 12 N -0.92 -53.88 11.33 21.45 0.24 -53.64 16 13 Si 0.94 44.65 29.54 68.60 2.03 46.67 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 17 C -0.10 -4.92 5.23 30.58 0.16 -4.76 16 18 C -0.08 -3.53 4.78 30.58 0.15 -3.38 16 19 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 20 H 0.06 1.24 6.47 -2.38 -0.02 1.22 16 21 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.07 1.99 5.83 -2.38 -0.01 1.98 16 23 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 24 H 0.07 1.77 6.23 -2.39 -0.01 1.76 16 25 H 0.08 1.75 6.30 -2.39 -0.02 1.73 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.07 2.10 6.35 -2.39 -0.02 2.08 16 29 H 0.05 2.31 6.62 -2.38 -0.02 2.29 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.06 3.21 6.08 -2.39 -0.01 3.20 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 1.76 6.20 -2.39 -0.01 1.74 16 37 H 0.05 2.31 7.22 -2.38 -0.02 2.29 16 Total: -1.00 -59.42 273.11 2.74 -56.67 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.02 Total: 6.94 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 3.61 Total: -34.96 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -3.91 Total: -75.33 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -59.42 2.74 -56.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.808 kcal (2) G-P(sol) polarization free energy of solvation -59.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds