Wall clock time and date at job start Sun Mar 29 2020 21:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38232 * 119.99735 * 179.76681 * 11 10 9 13 13 C 1.38236 * 120.00328 * 0.48227 * 12 11 10 14 14 C 1.50695 * 120.00136 * 179.76959 * 13 12 11 15 15 F 1.39906 * 109.47173 * 120.02349 * 14 13 12 16 16 F 1.39900 * 109.47425 * 240.02111 * 14 13 12 17 17 C 1.38233 * 119.99593 * 359.78981 * 13 12 11 18 18 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 23 23 H 1.08008 * 119.99912 * 180.25278 * 12 11 10 24 24 H 1.09002 * 109.47284 * 0.02562 * 14 13 12 25 25 H 1.08000 * 120.00181 * 179.97438 * 17 13 12 26 26 H 1.08003 * 120.00554 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6753 -4.1788 -1.1844 12 6 3.5773 -5.2262 -1.1798 13 6 4.0269 -5.7460 0.0196 14 6 5.0063 -6.8913 0.0246 15 9 6.1776 -6.5005 0.6824 16 9 4.4413 -7.9852 0.6890 17 6 3.5778 -5.2154 1.2144 18 6 2.6797 -4.1644 1.2098 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 2.3207 -3.7757 -2.1215 23 1 3.9280 -5.6410 -2.1133 24 1 5.2424 -7.1720 -1.0018 25 1 3.9287 -5.6216 2.1516 26 1 2.3286 -3.7502 2.1434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039496.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:30 Heat of formation + Delta-G solvation = -95.852171 kcal Electronic energy + Delta-G solvation = -13177.097682 eV Core-core repulsion = 10469.581839 eV Total energy + Delta-G solvation = -2707.515843 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.83133 -46.82368 -38.79032 -33.75760 -31.85056 -30.50810 -28.23759 -25.19264 -22.75323 -22.27677 -20.28186 -17.22446 -17.09913 -17.05648 -16.38538 -15.10405 -14.43342 -14.30844 -13.87779 -13.78147 -13.21771 -12.99077 -12.67941 -12.52733 -12.00848 -11.53452 -11.36863 -10.92540 -10.80764 -10.53040 -10.38398 -9.67796 -9.55541 -8.50745 -8.47180 -8.08119 -6.11760 -4.16354 1.68976 1.86906 3.26485 3.33060 3.37289 3.91833 4.17662 4.34984 4.41889 4.75366 5.22668 5.22816 5.31610 5.39951 5.82162 5.99705 6.03803 6.40681 6.43206 6.77928 6.97055 7.01727 7.37618 7.52292 7.70111 7.83646 8.21358 8.88724 9.48203 10.98240 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.057008 B = 0.006530 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.038319 B = 4286.703743 C = 4446.518176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.010 4.010 11 C -0.129 4.129 12 C -0.088 4.088 13 C -0.206 4.206 14 C 0.317 3.683 15 F -0.205 7.205 16 F -0.206 7.206 17 C -0.081 4.081 18 C -0.127 4.127 19 H 0.263 0.737 20 H 0.032 0.968 21 H 0.032 0.968 22 H 0.126 0.874 23 H 0.119 0.881 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 -10.874 -1.246 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.011 4.011 11 C -0.147 4.147 12 C -0.107 4.107 13 C -0.207 4.207 14 C 0.263 3.737 15 F -0.187 7.187 16 F -0.187 7.187 17 C -0.100 4.100 18 C -0.145 4.145 19 H 0.073 0.927 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.144 0.856 23 H 0.137 0.863 24 H 0.129 0.871 25 H 0.134 0.866 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.915 -10.777 -1.207 12.862 hybrid contribution 0.504 0.925 0.119 1.060 sum 7.420 -9.852 -1.089 12.382 Atomic orbital electron populations 1.69950 1.06060 1.26993 1.50145 1.25006 0.94900 0.99329 0.94984 0.86508 0.79843 0.82970 0.78242 1.20519 1.21090 1.19743 1.21016 0.93072 0.89694 1.51543 0.92380 1.18443 0.92585 0.89550 0.98743 1.20900 0.94429 0.93801 0.91922 1.21089 0.98324 0.96447 0.98794 1.20800 0.97190 0.96718 0.95953 1.20026 1.03979 1.01106 0.95559 1.20360 0.79105 0.82110 0.92094 1.92988 1.50074 1.91491 1.84117 1.92981 1.85605 1.56297 1.83865 1.20839 0.96460 0.96059 0.96604 1.21119 0.98246 0.96377 0.98797 0.92717 0.94992 0.94995 0.85649 0.86326 0.87115 0.86552 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.15 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -14.12 9.09 -34.44 -0.31 -14.43 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.04 1.09 5.10 -29.03 -0.15 0.94 15 10 C -0.01 -0.22 5.07 -104.62 -0.53 -0.75 15 11 C -0.13 -2.37 9.70 -39.59 -0.38 -2.75 15 12 C -0.09 -1.37 9.67 -39.58 -0.38 -1.75 15 13 C -0.21 -3.24 5.37 -104.63 -0.56 -3.80 15 14 C 0.32 4.16 5.45 36.00 0.20 4.36 15 15 F -0.21 -3.00 17.26 2.25 0.04 -2.96 15 16 F -0.21 -2.93 17.26 2.25 0.04 -2.89 15 17 C -0.08 -1.39 9.60 -39.58 -0.38 -1.77 15 18 C -0.13 -2.45 9.70 -39.58 -0.38 -2.83 15 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 20 H 0.03 0.84 8.09 -51.93 -0.42 0.42 15 21 H 0.03 0.83 8.08 -51.93 -0.42 0.41 15 22 H 0.13 2.19 8.06 -52.49 -0.42 1.77 15 23 H 0.12 1.40 7.95 -52.48 -0.42 0.98 15 24 H 0.11 1.05 7.88 -51.93 -0.41 0.64 15 25 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.12 2.31 8.06 -52.48 -0.42 1.88 15 LS Contribution 245.09 15.07 3.69 3.69 Total: -1.00 -29.23 245.09 -5.97 -35.20 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -2.47 Total: -2.84 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.99 Total: -21.23 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.15 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.08 Total: -5.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.23 -5.97 -35.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039496.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.651 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds