Wall clock time and date at job start Sun Mar 29 2020 21:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38232 * 119.99735 * 179.76681 * 11 10 9 13 13 C 1.38236 * 120.00328 * 0.48227 * 12 11 10 14 14 C 1.50695 * 120.00136 * 179.76959 * 13 12 11 15 15 F 1.39906 * 109.47173 * 120.02349 * 14 13 12 16 16 F 1.39900 * 109.47425 * 240.02111 * 14 13 12 17 17 C 1.38233 * 119.99593 * 359.78981 * 13 12 11 18 18 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 23 23 H 1.08008 * 119.99912 * 180.25278 * 12 11 10 24 24 H 1.09002 * 109.47284 * 0.02562 * 14 13 12 25 25 H 1.08000 * 120.00181 * 179.97438 * 17 13 12 26 26 H 1.08003 * 120.00554 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6753 -4.1788 -1.1844 12 6 3.5773 -5.2262 -1.1798 13 6 4.0269 -5.7460 0.0196 14 6 5.0063 -6.8913 0.0246 15 9 6.1776 -6.5005 0.6824 16 9 4.4413 -7.9852 0.6890 17 6 3.5778 -5.2154 1.2144 18 6 2.6797 -4.1644 1.2098 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 2.3207 -3.7757 -2.1215 23 1 3.9280 -5.6410 -2.1133 24 1 5.2424 -7.1720 -1.0018 25 1 3.9287 -5.6216 2.1516 26 1 2.3286 -3.7502 2.1434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039496.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:30 Heat of formation + Delta-G solvation = -111.491375 kcal Electronic energy + Delta-G solvation = -13177.775849 eV Core-core repulsion = 10469.581839 eV Total energy + Delta-G solvation = -2708.194010 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.88737 -47.88822 -40.20053 -35.64001 -33.58993 -31.88179 -29.93204 -26.76951 -24.45697 -23.64961 -21.75007 -18.57414 -18.35784 -18.17949 -18.10777 -16.83668 -15.95920 -15.84609 -15.24029 -14.86411 -14.55524 -14.32405 -14.28401 -13.93652 -13.51416 -13.30873 -13.08677 -12.63552 -12.50783 -12.02912 -11.88244 -11.60270 -11.39331 -10.63067 -9.84948 -9.62279 -8.23712 -6.36971 0.29152 0.48825 1.39584 1.40259 1.51847 2.37465 2.80623 2.87399 3.08105 3.34179 3.70209 4.07247 4.15752 4.18125 4.28387 4.59882 4.64801 4.97160 5.01516 5.30308 5.31204 5.42623 5.47910 5.70805 5.97778 6.00623 6.15923 6.75530 7.32128 8.86159 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.057008 B = 0.006530 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.038319 B = 4286.703743 C = 4446.518176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.052 3.948 10 C -0.044 4.044 11 C -0.139 4.139 12 C -0.072 4.072 13 C -0.202 4.202 14 C 0.319 3.681 15 F -0.214 7.214 16 F -0.212 7.212 17 C -0.086 4.086 18 C -0.142 4.142 19 H 0.266 0.734 20 H 0.004 0.996 21 H 0.010 0.990 22 H 0.128 0.872 23 H 0.168 0.832 24 H 0.163 0.837 25 H 0.132 0.868 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 -11.852 -2.187 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.044 4.044 11 C -0.157 4.157 12 C -0.090 4.090 13 C -0.203 4.203 14 C 0.266 3.734 15 F -0.195 7.195 16 F -0.194 7.194 17 C -0.104 4.104 18 C -0.160 4.160 19 H 0.075 0.925 20 H 0.023 0.977 21 H 0.028 0.972 22 H 0.146 0.854 23 H 0.186 0.814 24 H 0.180 0.820 25 H 0.150 0.850 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.011 -11.768 -2.146 14.976 hybrid contribution -0.139 1.136 0.422 1.220 sum 8.872 -10.632 -1.724 13.954 Atomic orbital electron populations 1.70069 1.07657 1.28069 1.51054 1.25908 0.95756 1.03093 0.94444 0.85432 0.78531 0.78364 0.78661 1.19485 1.20521 1.19154 1.21341 0.93086 0.91133 1.51344 0.92715 1.18175 0.92964 0.91082 0.96273 1.20615 0.95612 0.94120 0.94036 1.21202 0.99200 0.97533 0.97752 1.21201 0.95038 0.94783 0.97945 1.20486 1.03485 1.01316 0.95000 1.20710 0.77801 0.80667 0.94229 1.92978 1.50371 1.91587 1.84583 1.92975 1.85753 1.56358 1.84293 1.21049 0.95741 0.95264 0.98328 1.21089 0.99386 0.97571 0.97936 0.92468 0.97731 0.97170 0.85394 0.81448 0.81986 0.84987 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.05 15 2 C 0.01 0.37 5.46 84.65 0.46 0.83 15 3 Si 0.97 43.79 29.54 68.60 2.03 45.82 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 7 C -0.53 -29.98 9.09 25.60 0.23 -29.75 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 15 9 C 0.05 2.74 5.10 29.10 0.15 2.89 15 10 C -0.04 -1.89 5.07 -19.87 -0.10 -1.99 15 11 C -0.14 -4.98 9.70 22.27 0.22 -4.77 15 12 C -0.07 -1.97 9.67 22.27 0.22 -1.75 15 13 C -0.20 -5.69 5.37 -19.87 -0.11 -5.79 15 14 C 0.32 6.93 5.45 71.23 0.39 7.32 15 15 F -0.21 -5.46 17.26 44.97 0.78 -4.68 15 16 F -0.21 -5.27 17.26 44.97 0.78 -4.49 15 17 C -0.09 -2.80 9.60 22.27 0.21 -2.59 15 18 C -0.14 -5.53 9.70 22.27 0.22 -5.32 15 19 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 20 H 0.00 0.25 8.09 -2.39 -0.02 0.23 15 21 H 0.01 0.55 8.08 -2.38 -0.02 0.54 15 22 H 0.13 4.42 8.06 -2.91 -0.02 4.39 15 23 H 0.17 2.94 7.95 -2.91 -0.02 2.92 15 24 H 0.16 2.00 7.88 -2.39 -0.02 1.98 15 25 H 0.13 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.12 4.56 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -64.49 245.09 6.93 -57.57 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.18 Total: 1.76 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 1.89 Total: -40.92 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.28 Total: -55.05 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 1.55 Total: -9.18 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.49 6.93 -57.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039496.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.925 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds