Wall clock time and date at job start Sun Mar 29 2020 21:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38445 * 120.02532 * 2 1 4 4 F 1.35104 * 120.01039 * 0.02562 * 3 2 1 5 5 C 1.38452 * 119.97397 * 179.72906 * 3 2 1 6 6 C 1.38224 * 120.02448 * 0.24922 * 5 3 2 7 7 C 1.38187 * 120.05276 * 0.02562 * 6 5 3 8 8 C 1.50703 * 119.98544 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46684 * 264.99418 * 8 7 6 10 10 H 1.07992 * 120.00169 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99590 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99807 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00253 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47175 * 89.99821 * 13 11 9 15 15 H 1.48506 * 109.47576 * 209.99983 * 13 11 9 16 16 H 1.48501 * 109.47348 * 330.00223 * 13 11 9 17 17 C 1.38396 * 120.02725 * 180.21240 * 2 1 3 18 18 F 1.35098 * 120.01424 * 359.97438 * 17 2 1 19 19 H 1.09008 * 109.47085 * 89.99911 * 1 2 3 20 20 H 1.09000 * 109.47635 * 209.99862 * 1 2 3 21 21 H 1.09001 * 109.47633 * 330.00138 * 1 2 3 22 22 H 1.08004 * 119.98164 * 180.27356 * 5 3 2 23 23 H 1.08009 * 119.97229 * 179.97438 * 6 5 3 24 24 H 1.08991 * 109.47366 * 24.99515 * 8 7 6 25 25 H 1.09000 * 109.46960 * 145.00028 * 8 7 6 26 26 H 0.96999 * 119.99897 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1987 0.0000 4 9 1.5249 2.3691 0.0005 5 6 3.5842 1.1974 0.0057 6 6 4.2748 0.0001 0.0061 7 6 3.5844 -1.1970 0.0004 8 6 4.3389 -2.5016 0.0015 9 6 4.4899 -2.9956 -1.4142 10 1 4.0809 -2.4221 -2.2328 11 6 5.1502 -4.1798 -1.6643 12 7 5.2824 -4.6107 -2.8998 13 14 5.8570 -5.1722 -0.2484 14 1 4.8359 -6.1331 0.2410 15 1 7.0542 -5.9169 -0.7147 16 1 6.2428 -4.2556 0.8545 17 6 2.1995 -1.1982 -0.0044 18 9 1.5249 -2.3687 -0.0083 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 4.1248 2.1325 0.0101 23 1 5.3549 0.0001 0.0101 24 1 5.3248 -2.3507 0.4408 25 1 3.7891 -3.2387 0.5868 26 1 5.7473 -5.4437 -3.0758 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234497.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:19 Heat of formation + Delta-G solvation = -81.689248 kcal Electronic energy + Delta-G solvation = -13590.160220 eV Core-core repulsion = 10883.258528 eV Total energy + Delta-G solvation = -2706.901693 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.68550 -48.32346 -38.55302 -33.79547 -32.37809 -31.00231 -27.63548 -26.66273 -23.15998 -21.86834 -20.26120 -17.67957 -16.94657 -16.88387 -15.64602 -15.21760 -14.81304 -14.77162 -14.04115 -13.93115 -13.19028 -12.96782 -12.76457 -12.37456 -12.31632 -11.78901 -11.60282 -11.22179 -10.97440 -10.54621 -10.21057 -10.05647 -9.46163 -8.63382 -8.39229 -7.92460 -6.12492 -4.12878 1.42593 1.48471 3.26287 3.33726 3.34961 3.83777 4.32818 4.36987 4.88369 4.89846 5.00634 5.20750 5.36268 5.59526 5.70377 5.77150 5.97966 6.24326 6.29480 6.42264 6.54718 6.63746 6.88077 7.21275 7.27081 7.59895 8.40921 8.90496 9.46613 11.00334 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.047011 B = 0.008812 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.459287 B = 3176.690539 C = 3402.895245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.161 4.161 3 C 0.094 3.906 4 F -0.142 7.142 5 C -0.160 4.160 6 C -0.075 4.075 7 C -0.069 4.069 8 C 0.016 3.984 9 C -0.517 4.517 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.264 1.264 17 C 0.124 3.876 18 F -0.125 7.125 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.134 0.866 23 H 0.140 0.860 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 9.261 7.390 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.162 4.162 3 C 0.075 3.925 4 F -0.120 7.120 5 C -0.179 4.179 6 C -0.093 4.093 7 C -0.070 4.070 8 C -0.021 4.021 9 C -0.554 4.554 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.704 3.296 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.189 1.189 17 C 0.105 3.895 18 F -0.103 7.103 19 H 0.092 0.908 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.152 0.848 23 H 0.157 0.843 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.969 9.105 7.274 12.669 hybrid contribution 0.186 -0.607 0.485 0.799 sum -4.783 8.498 7.759 12.462 Atomic orbital electron populations 1.20586 0.89846 1.03126 1.02901 1.19749 0.97387 0.91265 1.07836 1.17021 0.89730 0.80141 1.05597 1.91438 1.80589 1.45757 1.94263 1.21072 0.91901 0.99749 1.05153 1.20797 1.00546 0.89980 0.97946 1.20467 0.91668 0.98418 0.96408 1.18773 0.95034 0.89049 0.99223 1.20848 1.36991 1.07175 0.90420 0.90806 1.24962 0.95428 0.97019 0.95574 1.69891 1.42526 1.22087 1.18992 0.86808 0.79072 0.80676 0.82997 1.20013 1.21119 1.18891 1.17056 0.89535 0.80360 1.02579 1.91484 1.79918 1.45487 1.93452 0.90828 0.90918 0.91222 0.84825 0.84253 0.94662 0.95244 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.66 36.00 0.35 -1.16 15 2 C -0.16 -2.74 5.89 -104.49 -0.62 -3.36 15 3 C 0.09 1.53 7.24 -39.43 -0.29 1.24 15 4 F -0.14 -2.16 16.48 2.25 0.04 -2.12 15 5 C -0.16 -2.46 10.02 -39.51 -0.40 -2.85 15 6 C -0.07 -1.29 9.67 -39.61 -0.38 -1.68 15 7 C -0.07 -1.41 5.08 -104.55 -0.53 -1.94 15 8 C 0.02 0.38 3.95 -29.03 -0.11 0.27 15 9 C -0.52 -14.52 9.65 -34.44 -0.33 -14.85 15 10 H 0.07 2.28 7.98 -52.49 -0.42 1.86 15 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 15 12 N -0.90 -27.27 13.96 55.43 0.77 -26.49 15 13 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 15 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.26 -6.00 6.54 56.52 0.37 -5.63 15 17 C 0.12 2.46 7.18 -39.43 -0.28 2.18 15 18 F -0.13 -2.63 15.78 2.25 0.04 -2.59 15 19 H 0.07 0.98 8.14 -51.92 -0.42 0.55 15 20 H 0.07 0.97 7.65 -51.93 -0.40 0.58 15 21 H 0.07 0.85 7.64 -51.93 -0.40 0.46 15 22 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 23 H 0.14 2.16 8.06 -52.48 -0.42 1.74 15 24 H 0.04 0.79 7.11 -51.93 -0.37 0.42 15 25 H 0.03 0.70 7.21 -51.93 -0.37 0.32 15 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 238.41 15.07 3.59 3.59 Total: -1.00 -29.87 238.41 -5.31 -35.18 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: -2.39 Total: -3.82 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.69 Total: -20.18 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.87 -5.31 -35.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234497.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.508 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds