Wall clock time and date at job start Sun Mar 29 2020 21:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00547 * 2 1 4 4 H 1.48492 * 109.47207 * 240.00240 * 3 2 1 5 5 H 1.48508 * 109.46818 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47021 * 119.99765 * 3 2 1 7 7 C 1.37882 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46951 * 179.97438 * 9 7 2 11 11 C 1.38189 * 120.02634 * 265.25210 * 10 9 7 12 12 C 1.38233 * 120.07687 * 180.30167 * 11 10 9 13 13 C 1.38292 * 120.12118 * 359.70080 * 12 11 10 14 14 C 1.38216 * 120.04005 * 0.02562 * 13 12 11 15 15 Cl 1.73592 * 120.03665 * 179.97438 * 14 13 12 16 16 C 1.38673 * 120.01567 * 85.00090 * 10 9 7 17 17 O 1.35919 * 120.06281 * 359.97438 * 16 10 9 18 18 H 0.97001 * 119.99592 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46754 * 60.00312 * 9 7 2 20 20 H 1.08990 * 109.47064 * 300.00114 * 9 7 2 21 21 H 1.08004 * 119.96163 * 0.03113 * 11 10 9 22 22 H 1.08001 * 119.94086 * 179.72401 * 12 11 10 23 23 H 1.07996 * 119.97939 * 180.02562 * 13 12 11 24 24 H 0.96700 * 114.00199 * 269.72394 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6447 -0.0027 11 6 2.6042 -4.2336 -1.1956 12 6 3.4977 -5.2884 -1.1972 13 6 4.0245 -5.7535 -0.0062 14 6 3.6581 -5.1645 1.1893 15 17 4.3189 -5.7488 2.6844 16 6 2.7605 -4.1050 1.1930 17 8 2.3983 -3.5237 2.3671 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5563 -0.8920 20 1 0.6239 -2.5575 0.8879 21 1 2.1948 -3.8721 -2.1273 22 1 3.7851 -5.7499 -2.1304 23 1 4.7226 -6.5775 -0.0102 24 1 2.9652 -2.7865 2.6323 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260545499.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:48 Heat of formation + Delta-G solvation = -39.545372 kcal Electronic energy + Delta-G solvation = -11605.868683 eV Core-core repulsion = 9316.758071 eV Total energy + Delta-G solvation = -2289.110612 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.30622 -36.15307 -36.00741 -33.43887 -31.21701 -29.26235 -27.07928 -23.45473 -22.04643 -20.63544 -17.76803 -16.35928 -15.87464 -15.49771 -14.80659 -14.46485 -13.74051 -12.84944 -12.59218 -12.23233 -11.84251 -11.66484 -11.20956 -11.01719 -10.78317 -10.68735 -10.52851 -10.16618 -9.60897 -9.45728 -8.47765 -8.15969 -7.94010 -6.09979 -4.15249 1.59021 1.77946 2.49869 3.27194 3.32459 3.34348 4.04397 4.39236 4.78533 5.22746 5.27758 5.52278 5.70789 5.89071 6.09906 6.40797 6.61334 6.80567 6.90557 7.24506 7.50154 7.70319 7.84552 8.21451 8.27099 8.89043 9.48773 10.99805 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.040726 B = 0.008941 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.363341 B = 3130.882088 C = 3418.415937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.051 3.949 10 C -0.047 4.047 11 C -0.109 4.109 12 C -0.121 4.121 13 C -0.129 4.129 14 C -0.063 4.063 15 Cl -0.081 7.081 16 C 0.112 3.888 17 O -0.481 6.481 18 H 0.264 0.736 19 H 0.030 0.970 20 H 0.041 0.959 21 H 0.128 0.872 22 H 0.124 0.876 23 H 0.125 0.875 24 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 -8.527 0.434 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.048 4.048 11 C -0.127 4.127 12 C -0.139 4.139 13 C -0.148 4.148 14 C -0.090 4.090 15 Cl -0.052 7.052 16 C 0.066 3.934 17 O -0.291 6.291 18 H 0.073 0.927 19 H 0.049 0.951 20 H 0.059 0.941 21 H 0.146 0.854 22 H 0.142 0.858 23 H 0.143 0.857 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.638 -8.873 0.576 11.096 hybrid contribution 0.927 1.237 0.128 1.552 sum 7.565 -7.635 0.704 10.771 Atomic orbital electron populations 1.69945 1.06045 1.27040 1.49776 1.24993 0.94870 0.99201 0.95003 0.86595 0.79530 0.82837 0.78697 1.20204 1.21172 1.20140 1.20927 0.92752 0.89810 1.52012 0.92725 1.18298 0.92405 0.88834 0.99012 1.21072 0.97007 0.96168 0.90582 1.21150 0.97744 0.95558 0.98269 1.21016 0.98229 0.97619 0.97076 1.20706 1.02119 1.01283 0.90645 1.21418 1.00151 1.00209 0.87269 1.98317 1.84940 1.87916 1.34051 1.18097 0.95145 0.93515 0.86622 1.84727 1.57350 1.51247 1.35805 0.92669 0.95140 0.94122 0.85404 0.85807 0.85717 0.75292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 14 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 14 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 14 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 14 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 7 C -0.52 -13.91 9.09 -34.44 -0.31 -14.23 14 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 14 9 C 0.05 1.29 4.82 -29.03 -0.14 1.15 14 10 C -0.05 -1.01 5.08 -104.48 -0.53 -1.54 14 11 C -0.11 -1.99 9.68 -39.60 -0.38 -2.38 14 12 C -0.12 -1.86 10.04 -39.56 -0.40 -2.25 14 13 C -0.13 -1.99 9.83 -39.57 -0.39 -2.38 14 14 C -0.06 -1.11 6.33 -39.36 -0.25 -1.36 14 15 Cl -0.08 -1.26 28.50 -51.86 -1.48 -2.74 14 16 C 0.11 2.24 6.67 -39.19 -0.26 1.98 14 17 O -0.48 -9.58 12.10 -19.48 -0.24 -9.81 14 18 H 0.26 7.24 8.31 -40.82 -0.34 6.90 14 19 H 0.03 0.80 8.05 -51.93 -0.42 0.38 14 20 H 0.04 1.11 7.69 -51.93 -0.40 0.72 14 21 H 0.13 2.20 8.06 -52.48 -0.42 1.78 14 22 H 0.12 1.48 8.06 -52.49 -0.42 1.06 14 23 H 0.12 1.59 8.06 -52.49 -0.42 1.17 14 24 H 0.39 6.63 9.06 45.56 0.41 7.04 14 LS Contribution 236.79 15.07 3.57 3.57 Total: -1.00 -29.20 236.79 -6.41 -35.60 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -1.21 Total: 1.94 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.76 Total: -19.41 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.24 Total: -9.81 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.48 Total: -2.74 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.20 -6.41 -35.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545499.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.941 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds