Wall clock time and date at job start Sun Mar 29 2020 21:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00547 * 2 1 4 4 H 1.48492 * 109.47207 * 240.00240 * 3 2 1 5 5 H 1.48508 * 109.46818 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47021 * 119.99765 * 3 2 1 7 7 C 1.37882 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46951 * 179.97438 * 9 7 2 11 11 C 1.38189 * 120.02634 * 265.25210 * 10 9 7 12 12 C 1.38233 * 120.07687 * 180.30167 * 11 10 9 13 13 C 1.38292 * 120.12118 * 359.70080 * 12 11 10 14 14 C 1.38216 * 120.04005 * 0.02562 * 13 12 11 15 15 Cl 1.73592 * 120.03665 * 179.97438 * 14 13 12 16 16 C 1.38673 * 120.01567 * 85.00090 * 10 9 7 17 17 O 1.35919 * 120.06281 * 359.97438 * 16 10 9 18 18 H 0.97001 * 119.99592 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46754 * 60.00312 * 9 7 2 20 20 H 1.08990 * 109.47064 * 300.00114 * 9 7 2 21 21 H 1.08004 * 119.96163 * 0.03113 * 11 10 9 22 22 H 1.08001 * 119.94086 * 179.72401 * 12 11 10 23 23 H 1.07996 * 119.97939 * 180.02562 * 13 12 11 24 24 H 0.96700 * 114.00199 * 269.72394 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6447 -0.0027 11 6 2.6042 -4.2336 -1.1956 12 6 3.4977 -5.2884 -1.1972 13 6 4.0245 -5.7535 -0.0062 14 6 3.6581 -5.1645 1.1893 15 17 4.3189 -5.7488 2.6844 16 6 2.7605 -4.1050 1.1930 17 8 2.3983 -3.5237 2.3671 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5563 -0.8920 20 1 0.6239 -2.5575 0.8879 21 1 2.1948 -3.8721 -2.1273 22 1 3.7851 -5.7499 -2.1304 23 1 4.7226 -6.5775 -0.0102 24 1 2.9652 -2.7865 2.6323 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260545499.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:48 Heat of formation + Delta-G solvation = -58.258542 kcal Electronic energy + Delta-G solvation = -11606.680147 eV Core-core repulsion = 9316.758071 eV Total energy + Delta-G solvation = -2289.922076 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.74820 -37.52465 -37.40095 -35.40514 -32.95919 -30.66139 -28.89187 -25.34184 -23.44178 -22.21742 -19.26504 -18.44493 -17.28644 -16.96092 -16.50365 -16.10446 -15.10631 -14.43586 -14.36777 -13.77040 -13.56448 -13.18084 -12.95028 -12.66015 -12.39353 -12.32133 -11.99928 -11.88503 -11.53030 -11.11997 -10.59800 -9.54248 -9.44053 -8.19844 -6.33577 0.21099 0.38143 1.17748 1.41460 1.43364 1.51604 2.39024 2.68733 3.11945 3.37666 3.98372 4.17111 4.40697 4.49670 4.69871 4.99589 5.19007 5.26642 5.36286 5.46959 5.73222 5.85355 5.86730 6.14999 6.78698 6.82566 7.35208 8.89796 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.040726 B = 0.008941 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.363341 B = 3130.882088 C = 3418.415937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.063 3.937 10 C -0.083 4.083 11 C -0.116 4.116 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.070 4.070 15 Cl -0.064 7.064 16 C 0.093 3.907 17 O -0.497 6.497 18 H 0.265 0.735 19 H 0.006 0.994 20 H 0.004 0.996 21 H 0.131 0.869 22 H 0.169 0.831 23 H 0.163 0.837 24 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -9.505 -0.181 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.134 4.134 12 C -0.122 4.122 13 C -0.132 4.132 14 C -0.097 4.097 15 Cl -0.035 7.035 16 C 0.047 3.953 17 O -0.308 6.308 18 H 0.074 0.926 19 H 0.024 0.976 20 H 0.022 0.978 21 H 0.149 0.851 22 H 0.187 0.813 23 H 0.181 0.819 24 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.925 -9.863 -0.035 13.301 hybrid contribution 0.251 1.425 0.328 1.483 sum 9.175 -8.438 0.293 12.469 Atomic orbital electron populations 1.70086 1.07807 1.27986 1.51041 1.25917 0.95675 1.03088 0.94537 0.85491 0.78228 0.78071 0.79212 1.19231 1.20962 1.19091 1.21251 0.92975 0.90828 1.51297 0.92431 1.17949 0.92719 0.90735 0.95957 1.20794 0.98248 0.96586 0.92774 1.21291 0.98481 0.96494 0.97182 1.21428 0.96006 0.95755 0.98997 1.21208 1.01309 1.01103 0.89581 1.21501 0.99693 0.99578 0.88903 1.98322 1.84462 1.87479 1.33267 1.18222 0.96367 0.94733 0.85948 1.84693 1.58212 1.51751 1.36137 0.92626 0.97605 0.97806 0.85099 0.81347 0.81944 0.74508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.33 14 2 C 0.01 0.35 5.46 84.66 0.46 0.81 14 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 14 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 14 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 14 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 7 C -0.53 -29.02 9.09 25.60 0.23 -28.78 14 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 14 9 C 0.06 3.36 4.82 29.10 0.14 3.50 14 10 C -0.08 -3.60 5.08 -19.77 -0.10 -3.70 14 11 C -0.12 -4.11 9.68 22.26 0.22 -3.90 14 12 C -0.10 -2.78 10.04 22.28 0.22 -2.56 14 13 C -0.11 -3.05 9.83 22.28 0.22 -2.83 14 14 C -0.07 -2.29 6.33 22.41 0.14 -2.14 14 15 Cl -0.06 -1.85 28.50 -2.72 -0.08 -1.93 14 16 C 0.09 3.71 6.67 22.52 0.15 3.86 14 17 O -0.50 -20.28 12.10 -92.63 -1.12 -21.40 14 18 H 0.26 14.94 8.31 -92.71 -0.77 14.17 14 19 H 0.01 0.32 8.05 -2.39 -0.02 0.30 14 20 H 0.00 0.22 7.69 -2.39 -0.02 0.20 14 21 H 0.13 4.43 8.06 -2.91 -0.02 4.41 14 22 H 0.17 3.05 8.06 -2.91 -0.02 3.02 14 23 H 0.16 3.18 8.06 -2.91 -0.02 3.16 14 24 H 0.40 13.97 9.06 -74.06 -0.67 13.30 14 Total: -1.00 -64.22 236.79 3.35 -60.88 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.55 Total: 8.30 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 1.69 Total: -35.73 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.28 Total: -55.33 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.12 Total: -21.40 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -64.22 3.35 -60.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545499.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.618 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds