Wall clock time and date at job start Sun Mar 29 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.53624 * 2 1 4 4 C 1.51585 * 110.59901 * 237.16828 * 2 1 3 5 5 O 1.21234 * 127.15583 * 61.28369 * 4 2 1 6 6 N 1.34762 * 105.68548 * 241.32268 * 4 2 1 7 7 C 1.46503 * 124.18083 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47082 * 89.99457 * 7 6 4 9 9 H 1.08002 * 120.00584 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00242 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99648 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47159 * 89.99980 * 12 10 8 14 14 H 1.48496 * 109.46749 * 209.99660 * 12 10 8 15 15 H 1.48497 * 109.46990 * 329.99792 * 12 10 8 16 16 C 1.33792 * 111.64692 * 359.97438 * 6 4 2 17 17 O 1.21541 * 123.77082 * 179.97438 * 16 6 4 18 18 N 1.34867 * 112.50101 * 0.08951 * 16 6 4 19 19 C 1.46497 * 126.87431 * 179.97438 * 18 16 6 20 20 H 1.08998 * 109.47363 * 179.29802 * 1 2 3 21 21 H 1.09005 * 109.46883 * 299.30148 * 1 2 3 22 22 H 1.09005 * 109.46692 * 59.29910 * 1 2 3 23 23 H 1.08995 * 109.47574 * 210.00447 * 7 6 4 24 24 H 1.09002 * 109.46753 * 329.99920 * 7 6 4 25 25 H 0.96997 * 120.00177 * 179.97438 * 11 10 8 26 26 H 1.09001 * 109.47600 * 269.91000 * 19 18 16 27 27 H 1.09003 * 109.47020 * 29.91069 * 19 18 16 28 28 H 1.08998 * 109.47164 * 149.90771 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7693 -1.1923 5 8 1.8864 -0.5174 -2.3649 6 7 2.7743 -1.7919 -0.6776 7 6 3.4723 -2.7968 -1.4834 8 6 4.8783 -2.3304 -1.7604 9 1 5.2182 -1.3807 -1.3745 10 6 5.7309 -3.1162 -2.5066 11 7 6.9581 -2.7094 -2.7479 12 14 5.1429 -4.7585 -3.1747 13 1 4.5474 -4.5608 -4.5207 14 1 6.2930 -5.6925 -3.2747 15 1 4.1209 -5.3277 -2.2600 16 6 2.7650 -1.7756 0.6601 17 8 3.3361 -2.5973 1.3499 18 7 2.0490 -0.7471 1.1587 19 6 1.8308 -0.4317 2.5726 20 1 -0.3634 -1.0276 -0.0126 21 1 -0.3633 0.5030 0.8962 22 1 -0.3633 0.5247 -0.8837 23 1 3.5031 -3.7411 -0.9399 24 1 2.9438 -2.9374 -2.4263 25 1 7.5580 -3.2623 -3.2725 26 1 0.9325 -0.9396 2.9238 27 1 2.6887 -0.7659 3.1561 28 1 1.7088 0.6450 2.6901 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036577.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:45 Heat of formation + Delta-G solvation = -36.744356 kcal Electronic energy + Delta-G solvation = -14409.686537 eV Core-core repulsion = 11848.114067 eV Total energy + Delta-G solvation = -2561.572470 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.74737 -37.97716 -35.96873 -34.91725 -32.59909 -31.02273 -29.20226 -26.45821 -24.42254 -22.59415 -21.27681 -19.64501 -17.35604 -16.78211 -16.36603 -15.73929 -15.13106 -14.64076 -14.17934 -14.09294 -13.84712 -13.14569 -12.67549 -12.50187 -12.44913 -12.24633 -11.94541 -11.81056 -11.28668 -10.67833 -10.40490 -10.12065 -9.65914 -9.53260 -8.85623 -8.65617 -8.55628 -6.15150 -4.16695 2.18750 2.63316 3.27137 3.32733 3.34861 3.47942 3.68564 4.34273 4.39545 4.78817 4.96340 5.15160 5.17214 5.43103 5.50074 5.58261 5.68728 5.93338 6.07021 6.40446 6.61205 6.67352 6.90432 7.43092 7.82045 7.99758 8.33980 8.70627 8.84569 9.41390 10.97839 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.010153 C = 0.009218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.719901 B = 2757.035967 C = 3036.728475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.119 0.881 4 C 0.523 3.477 5 O -0.473 6.473 6 N -0.553 5.553 7 C 0.220 3.780 8 C -0.538 4.538 9 H 0.076 0.924 10 C 0.078 3.922 11 N -0.891 5.891 12 Si 0.876 3.124 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.263 1.263 16 C 0.700 3.300 17 O -0.539 6.539 18 N -0.638 5.638 19 C 0.127 3.873 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.267 0.733 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 5.210 7.599 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 H 0.136 0.864 4 C 0.309 3.691 5 O -0.344 6.344 6 N -0.296 5.296 7 C 0.101 3.899 8 C -0.576 4.576 9 H 0.094 0.906 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.702 3.298 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 C 0.403 3.597 17 O -0.412 6.412 18 N -0.380 5.380 19 C -0.015 4.015 20 H 0.083 0.917 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.879 4.784 7.327 15.570 hybrid contribution -0.011 -0.729 -0.381 0.823 sum -12.889 4.054 6.946 15.193 Atomic orbital electron populations 1.21885 0.91478 1.03443 1.03518 1.22079 0.97038 0.98110 0.84699 0.86393 1.20635 0.77871 0.80996 0.89580 1.90743 1.57923 1.68971 1.16748 1.46480 1.47198 1.28728 1.07176 1.19930 0.93202 0.86584 0.90150 1.21125 0.94269 1.07499 1.34701 0.90558 1.24788 0.94595 0.97962 0.95208 1.69877 1.05830 1.38166 1.38949 0.86850 0.79066 0.83869 0.80051 1.19666 1.20601 1.18754 1.16001 0.79445 0.82074 0.82209 1.90922 1.47837 1.41252 1.61209 1.47685 1.54779 1.29359 1.06162 1.21340 1.02061 1.00681 0.77390 0.91744 0.90937 0.90087 0.93088 0.93702 0.92266 0.92695 0.90258 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.46 37.16 0.35 -1.11 15 2 C 0.09 1.22 4.04 -68.20 -0.28 0.94 15 3 H 0.12 1.37 8.14 -51.93 -0.42 0.95 15 4 C 0.52 10.24 7.65 -10.56 -0.08 10.16 15 5 O -0.47 -10.39 17.76 5.60 0.10 -10.29 15 6 N -0.55 -12.36 2.59 -121.92 -0.32 -12.68 15 7 C 0.22 5.61 4.52 -5.19 -0.02 5.59 15 8 C -0.54 -15.94 9.94 -34.44 -0.34 -16.28 15 9 H 0.08 2.48 8.06 -52.49 -0.42 2.05 15 10 C 0.08 2.31 5.47 -17.82 -0.10 2.21 15 11 N -0.89 -27.69 13.96 55.43 0.77 -26.91 15 12 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 15 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.26 -6.21 6.54 56.52 0.37 -5.84 15 16 C 0.70 14.65 8.32 -87.71 -0.73 13.92 15 17 O -0.54 -13.05 17.17 5.33 0.09 -12.96 15 18 N -0.64 -9.72 3.15 -180.16 -0.57 -10.29 15 19 C 0.13 1.34 11.01 59.85 0.66 2.00 15 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.05 1.31 6.92 -51.93 -0.36 0.95 15 24 H 0.05 1.11 7.43 -51.93 -0.39 0.73 15 25 H 0.27 7.70 8.31 -40.82 -0.34 7.36 15 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 27 H 0.08 0.92 8.04 -51.93 -0.42 0.50 15 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 LS Contribution 250.88 15.07 3.78 3.78 Total: -1.00 -35.26 250.88 -4.64 -39.90 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -3.29 Total: -4.88 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: -0.54 Total: 17.42 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.11 Total: -49.88 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.19 Total: -23.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -35.26 -4.64 -39.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036577.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.152 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds