Wall clock time and date at job start Sun Mar 29 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.53624 * 2 1 4 4 C 1.51585 * 110.59901 * 237.16828 * 2 1 3 5 5 O 1.21234 * 127.15583 * 61.28369 * 4 2 1 6 6 N 1.34762 * 105.68548 * 241.32268 * 4 2 1 7 7 C 1.46503 * 124.18083 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47082 * 89.99457 * 7 6 4 9 9 H 1.08002 * 120.00584 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00242 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99648 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47159 * 89.99980 * 12 10 8 14 14 H 1.48496 * 109.46749 * 209.99660 * 12 10 8 15 15 H 1.48497 * 109.46990 * 329.99792 * 12 10 8 16 16 C 1.33792 * 111.64692 * 359.97438 * 6 4 2 17 17 O 1.21541 * 123.77082 * 179.97438 * 16 6 4 18 18 N 1.34867 * 112.50101 * 0.08951 * 16 6 4 19 19 C 1.46497 * 126.87431 * 179.97438 * 18 16 6 20 20 H 1.08998 * 109.47363 * 179.29802 * 1 2 3 21 21 H 1.09005 * 109.46883 * 299.30148 * 1 2 3 22 22 H 1.09005 * 109.46692 * 59.29910 * 1 2 3 23 23 H 1.08995 * 109.47574 * 210.00447 * 7 6 4 24 24 H 1.09002 * 109.46753 * 329.99920 * 7 6 4 25 25 H 0.96997 * 120.00177 * 179.97438 * 11 10 8 26 26 H 1.09001 * 109.47600 * 269.91000 * 19 18 16 27 27 H 1.09003 * 109.47020 * 29.91069 * 19 18 16 28 28 H 1.08998 * 109.47164 * 149.90771 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7693 -1.1923 5 8 1.8864 -0.5174 -2.3649 6 7 2.7743 -1.7919 -0.6776 7 6 3.4723 -2.7968 -1.4834 8 6 4.8783 -2.3304 -1.7604 9 1 5.2182 -1.3807 -1.3745 10 6 5.7309 -3.1162 -2.5066 11 7 6.9581 -2.7094 -2.7479 12 14 5.1429 -4.7585 -3.1747 13 1 4.5474 -4.5608 -4.5207 14 1 6.2930 -5.6925 -3.2747 15 1 4.1209 -5.3277 -2.2600 16 6 2.7650 -1.7756 0.6601 17 8 3.3361 -2.5973 1.3499 18 7 2.0490 -0.7471 1.1587 19 6 1.8308 -0.4317 2.5726 20 1 -0.3634 -1.0276 -0.0126 21 1 -0.3633 0.5030 0.8962 22 1 -0.3633 0.5247 -0.8837 23 1 3.5031 -3.7411 -0.9399 24 1 2.9438 -2.9374 -2.4263 25 1 7.5580 -3.2623 -3.2725 26 1 0.9325 -0.9396 2.9238 27 1 2.6887 -0.7659 3.1561 28 1 1.7088 0.6450 2.6901 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036577.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:45 Heat of formation + Delta-G solvation = -63.433952 kcal Electronic energy + Delta-G solvation = -14410.843885 eV Core-core repulsion = 11848.114067 eV Total energy + Delta-G solvation = -2562.729817 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.26127 -39.59308 -37.43255 -36.64717 -34.74747 -32.09310 -31.00770 -27.83455 -25.79479 -24.48423 -22.64708 -21.21322 -19.41553 -18.39865 -17.92428 -17.32663 -16.71660 -16.19211 -15.82194 -15.52112 -15.34841 -14.67374 -14.38989 -13.99852 -13.66372 -13.42137 -13.22673 -13.15390 -12.72285 -12.60335 -12.33277 -11.88171 -11.70920 -11.10160 -10.91011 -10.62653 -9.90348 -8.43574 -6.53002 0.66316 1.21525 1.31294 1.35470 1.44473 2.04258 2.16255 2.25131 2.89223 3.04688 3.73906 3.97524 4.17837 4.47772 4.56946 4.68303 4.69901 4.77469 4.78825 4.92501 5.15548 5.20693 5.23824 5.51314 6.01713 6.26183 6.45530 6.47585 7.05176 7.16296 8.73335 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.010153 C = 0.009218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.719901 B = 2757.035967 C = 3036.728475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.102 3.898 3 H 0.152 0.848 4 C 0.510 3.490 5 O -0.506 6.506 6 N -0.573 5.573 7 C 0.229 3.771 8 C -0.554 4.554 9 H 0.028 0.972 10 C 0.018 3.982 11 N -0.937 5.937 12 Si 0.950 3.050 13 H -0.256 1.256 14 H -0.270 1.270 15 H -0.247 1.247 16 C 0.688 3.312 17 O -0.586 6.586 18 N -0.620 5.620 19 C 0.116 3.884 20 H 0.054 0.946 21 H 0.113 0.887 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.274 0.726 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.787 5.602 8.332 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.004 4.004 3 H 0.170 0.830 4 C 0.299 3.701 5 O -0.379 6.379 6 N -0.315 5.315 7 C 0.108 3.892 8 C -0.592 4.592 9 H 0.046 0.954 10 C -0.181 4.181 11 N -0.575 5.575 12 Si 0.771 3.229 13 H -0.180 1.180 14 H -0.195 1.195 15 H -0.170 1.170 16 C 0.390 3.610 17 O -0.463 6.463 18 N -0.360 5.360 19 C -0.023 4.023 20 H 0.073 0.927 21 H 0.132 0.868 22 H 0.110 0.890 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.405 5.245 8.101 18.178 hybrid contribution 0.782 -0.716 -0.555 1.197 sum -14.622 4.529 7.546 17.066 Atomic orbital electron populations 1.21935 0.87677 1.03695 1.06076 1.22325 0.99516 0.97819 0.80741 0.83038 1.21717 0.76958 0.80558 0.90898 1.90711 1.58978 1.69597 1.18578 1.46554 1.47650 1.29239 1.08091 1.19543 0.91267 0.87427 0.90964 1.21309 0.96818 1.06027 1.35021 0.95393 1.25850 0.94500 1.02592 0.95206 1.70021 1.07372 1.40234 1.39923 0.85685 0.79222 0.78061 0.79946 1.18033 1.19522 1.17042 1.16290 0.80006 0.83116 0.81542 1.90873 1.50133 1.43397 1.61877 1.47932 1.52720 1.27100 1.08263 1.21797 1.02509 1.03785 0.74184 0.92664 0.86840 0.89040 0.93466 0.93003 0.91716 0.90226 0.91736 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.46 71.98 0.68 -1.46 15 2 C 0.10 2.50 4.04 44.37 0.18 2.68 15 3 H 0.15 2.86 8.14 -2.39 -0.02 2.84 15 4 C 0.51 19.69 7.65 87.94 0.67 20.36 15 5 O -0.51 -22.24 17.76 -2.89 -0.05 -22.29 15 6 N -0.57 -25.93 2.59 -776.90 -2.01 -27.94 15 7 C 0.23 11.92 4.52 85.63 0.39 12.30 15 8 C -0.55 -34.20 9.94 25.60 0.25 -33.94 15 9 H 0.03 1.92 8.06 -2.91 -0.02 1.90 15 10 C 0.02 1.09 5.47 84.66 0.46 1.55 15 11 N -0.94 -60.03 13.96 21.45 0.30 -59.73 15 12 Si 0.95 44.82 27.47 68.60 1.88 46.70 15 13 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 15 H -0.25 -10.93 6.54 99.48 0.65 -10.27 15 16 C 0.69 28.83 8.32 179.33 1.49 30.32 15 17 O -0.59 -29.02 17.17 -3.85 -0.07 -29.09 15 18 N -0.62 -17.41 3.15 -842.14 -2.66 -20.07 15 19 C 0.12 2.02 11.01 127.77 1.41 3.43 15 20 H 0.05 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.11 0.95 8.14 -2.38 -0.02 0.93 15 22 H 0.09 1.33 8.14 -2.38 -0.02 1.31 15 23 H 0.05 2.47 6.92 -2.39 -0.02 2.45 15 24 H 0.05 2.60 7.43 -2.39 -0.02 2.58 15 25 H 0.27 16.10 8.31 -92.71 -0.77 15.33 15 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 15 27 H 0.06 1.36 8.04 -2.39 -0.02 1.34 15 28 H 0.12 1.07 8.14 -2.39 -0.02 1.05 15 Total: -1.00 -81.94 250.88 4.04 -77.90 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.10 Total: -0.73 kcal Atomic # 6 Polarization: 29.72 SS G_CDS: 5.54 Total: 35.25 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.37 Total: -107.74 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.12 Total: -51.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -81.94 4.04 -77.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036577.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.469 kcal (2) G-P(sol) polarization free energy of solvation -81.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds