Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38205 * 119.99831 * 2 1 4 4 C 1.38431 * 119.99752 * 180.02562 * 3 2 1 5 5 F 1.35104 * 120.00085 * 179.97438 * 4 3 2 6 6 C 1.38467 * 120.00175 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.00096 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47320 * 279.97240 * 7 6 4 9 9 H 1.07996 * 119.99653 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00150 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00007 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00029 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.46907 * 90.00132 * 12 10 8 14 14 H 1.48496 * 109.47309 * 209.99889 * 12 10 8 15 15 H 1.48493 * 109.47140 * 330.00384 * 12 10 8 16 16 C 1.38165 * 120.00095 * 359.97438 * 6 4 3 17 17 C 1.38422 * 120.00010 * 180.02562 * 2 1 3 18 18 F 1.35104 * 119.99809 * 359.95913 * 17 2 1 19 19 H 1.08997 * 109.47395 * 89.99805 * 1 2 3 20 20 H 1.08992 * 109.47218 * 210.00380 * 1 2 3 21 21 H 1.09007 * 109.47002 * 330.00483 * 1 2 3 22 22 H 1.08000 * 120.00631 * 359.74532 * 3 2 1 23 23 H 1.08999 * 109.47234 * 39.97669 * 7 6 4 24 24 H 1.09009 * 109.46690 * 159.97333 * 7 6 4 25 25 H 0.97001 * 119.99829 * 180.02562 * 11 10 8 26 26 H 1.07999 * 120.00220 * 180.02562 * 16 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1969 -0.0005 5 9 4.2579 2.3669 -0.0011 6 6 4.2747 -0.0023 -0.0016 7 6 5.7817 -0.0023 -0.0016 8 6 6.2840 0.2450 -1.4007 9 1 5.5822 0.3883 -2.2089 10 6 7.6396 0.2894 -1.6487 11 7 8.0780 0.5057 -2.8696 12 14 8.8534 0.0423 -0.2505 13 1 9.1756 -1.4019 -0.1242 14 1 10.0965 0.8037 -0.5337 15 1 8.2533 0.5283 1.0178 16 6 3.5839 -1.1988 -0.0016 17 6 2.1991 -1.1988 -0.0005 18 9 1.5236 -2.3688 -0.0002 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5138 22 1 1.6581 2.1323 -0.0042 23 1 6.1450 0.7846 0.6593 24 1 6.1449 -0.9682 0.3495 25 1 9.0316 0.5366 -3.0441 26 1 4.1239 -2.1341 -0.0020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = -99.869963 kcal Electronic energy + Delta-G solvation = -13514.067883 eV Core-core repulsion = 10806.377815 eV Total energy + Delta-G solvation = -2707.690068 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.91452 -49.77913 -40.00910 -35.79493 -34.13385 -31.22825 -30.98678 -27.44057 -24.32829 -23.93894 -21.96166 -19.06608 -18.28036 -18.11099 -17.94365 -16.86512 -16.34299 -16.19471 -15.31506 -15.26296 -14.84226 -14.22355 -14.17089 -14.07375 -13.92583 -13.37998 -13.04171 -12.79202 -12.49368 -12.34918 -11.86887 -11.75033 -11.57515 -10.82041 -9.87430 -9.30933 -8.33381 -6.39747 0.00880 0.12982 1.34801 1.37476 1.48856 2.32884 2.40746 3.00370 3.19427 3.31681 3.65789 3.77472 4.04560 4.21442 4.57946 4.72525 4.78576 4.81028 4.95204 5.00486 5.07529 5.22521 5.26962 5.45051 5.51639 5.89182 6.18149 6.64502 7.23630 8.83221 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.043021 B = 0.008873 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.682480 B = 3154.854630 C = 3444.169304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C -0.120 4.120 4 C 0.071 3.929 5 F -0.145 7.145 6 C -0.077 4.077 7 C 0.021 3.979 8 C -0.524 4.524 9 H 0.027 0.973 10 C 0.011 3.989 11 N -0.946 5.946 12 Si 0.950 3.050 13 H -0.259 1.259 14 H -0.282 1.282 15 H -0.248 1.248 16 C -0.133 4.133 17 C 0.079 3.921 18 F -0.136 7.136 19 H 0.085 0.915 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.171 0.829 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.269 0.731 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 -1.411 8.970 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.052 3.948 5 F -0.124 7.124 6 C -0.078 4.078 7 C -0.016 4.016 8 C -0.561 4.561 9 H 0.046 0.954 10 C -0.187 4.187 11 N -0.586 5.586 12 Si 0.773 3.227 13 H -0.184 1.184 14 H -0.207 1.207 15 H -0.171 1.171 16 C -0.151 4.151 17 C 0.060 3.940 18 F -0.115 7.115 19 H 0.104 0.896 20 H 0.095 0.905 21 H 0.114 0.886 22 H 0.189 0.811 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.135 -1.394 8.865 15.908 hybrid contribution 1.121 -0.029 -0.117 1.128 sum -12.014 -1.423 8.747 14.929 Atomic orbital electron populations 1.20794 0.86781 1.04733 1.03977 1.19981 0.98895 0.89984 1.01560 1.21083 0.90532 1.00165 1.02109 1.17904 0.90901 0.80957 1.05079 1.91453 1.81008 1.45975 1.93957 1.20058 0.97624 0.91924 0.98169 1.18612 0.88322 0.98377 0.96297 1.21050 0.92304 1.49725 0.93063 0.95429 1.25959 1.00401 0.93857 0.98461 1.70049 1.15330 1.50933 1.22319 0.85660 0.77850 0.79387 0.79853 1.18409 1.20713 1.17107 1.20978 0.92600 0.98788 1.02774 1.17531 0.89409 0.81640 1.05417 1.91456 1.79959 1.45921 1.94116 0.89639 0.90500 0.88566 0.81115 0.94929 0.93811 0.92198 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.83 71.24 0.70 -1.21 15 2 C -0.10 -2.79 5.88 -19.83 -0.12 -2.91 15 3 C -0.12 -3.54 9.68 22.31 0.22 -3.32 15 4 C 0.07 2.76 7.24 22.37 0.16 2.92 15 5 F -0.15 -6.22 16.66 44.97 0.75 -5.47 15 6 C -0.08 -3.22 5.08 -19.83 -0.10 -3.32 15 7 C 0.02 1.01 3.90 29.10 0.11 1.13 15 8 C -0.52 -30.73 9.64 25.60 0.25 -30.48 15 9 H 0.03 1.81 7.98 -2.91 -0.02 1.79 15 10 C 0.01 0.63 5.47 84.65 0.46 1.09 15 11 N -0.95 -59.67 13.96 21.45 0.30 -59.37 15 12 Si 0.95 43.92 27.47 68.60 1.88 45.81 15 13 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 15 H -0.25 -10.69 6.54 99.48 0.65 -10.04 15 16 C -0.13 -4.81 9.65 22.31 0.22 -4.59 15 17 C 0.08 2.48 7.24 22.37 0.16 2.65 15 18 F -0.14 -3.98 16.47 44.97 0.74 -3.24 15 19 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.08 1.30 7.64 -2.39 -0.02 1.28 15 21 H 0.10 1.28 8.09 -2.38 -0.02 1.26 15 22 H 0.17 3.79 8.06 -2.91 -0.02 3.76 15 23 H 0.03 1.57 7.00 -2.39 -0.02 1.55 15 24 H 0.04 1.95 7.43 -2.38 -0.02 1.94 15 25 H 0.27 15.72 8.31 -92.71 -0.77 14.95 15 26 H 0.15 4.96 8.04 -2.91 -0.02 4.93 15 Total: -1.00 -67.06 239.61 6.87 -60.19 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.13 Total: 0.13 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 2.06 Total: -38.05 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.49 Total: -8.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.81 kcal Total: -67.06 6.87 -60.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.681 kcal (2) G-P(sol) polarization free energy of solvation -67.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds