Wall clock time and date at job start Sun Mar 29 2020 21:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 5 5 C 1.29688 * 116.87094 * 359.97438 * 4 3 2 6 6 N 1.38611 * 124.95101 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00198 * 359.97438 * 6 5 4 8 8 C 1.52997 * 109.47272 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.47137 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99549 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00430 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99604 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46832 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46951 * 119.99939 * 13 11 9 16 16 H 1.48502 * 109.46962 * 240.00093 * 13 11 9 17 17 S 1.70966 * 110.09929 * 359.73162 * 5 4 3 18 18 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 21 21 H 1.07998 * 122.70777 * 359.97438 * 3 2 1 22 22 H 0.97006 * 120.00076 * 179.97438 * 6 5 4 23 23 H 1.09000 * 109.46952 * 299.99379 * 7 6 5 24 24 H 1.08996 * 109.47571 * 59.99584 * 7 6 5 25 25 H 1.09004 * 109.47100 * 299.99922 * 8 7 6 26 26 H 1.09002 * 109.47691 * 59.99658 * 8 7 6 27 27 H 0.97000 * 119.99813 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 7 3.5850 0.8188 -0.0005 5 6 3.9315 -0.4309 -0.0005 6 7 5.2385 -0.8925 -0.0005 7 6 6.3517 0.0597 -0.0011 8 6 7.6769 -0.7049 -0.0003 9 6 8.8221 0.2748 -0.0004 10 1 8.6245 1.3366 -0.0013 11 6 10.1221 -0.1845 0.0008 12 7 10.3628 -1.4774 0.0025 13 14 11.5417 1.0299 0.0001 14 1 11.0077 2.4155 -0.0012 15 1 12.3722 0.8211 1.2132 16 1 12.3735 0.8182 -1.2118 17 16 2.5413 -1.4260 0.0078 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 1.8967 2.0853 -0.0004 22 1 5.4160 -1.8462 0.0000 23 1 6.2937 0.6859 -0.8914 24 1 6.2940 0.6869 0.8885 25 1 7.7347 -1.3308 0.8902 26 1 7.7350 -1.3323 -0.8897 27 1 11.2775 -1.8004 0.0037 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120771.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:55 Heat of formation + Delta-G solvation = 29.953205 kcal Electronic energy + Delta-G solvation = -11274.905855 eV Core-core repulsion = 9158.978480 eV Total energy + Delta-G solvation = -2115.927375 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.30883 -35.93793 -33.19015 -31.82261 -29.65542 -26.09912 -24.86208 -23.09773 -21.27669 -19.16898 -18.09614 -16.49313 -15.78373 -14.91467 -14.60455 -14.20329 -14.14354 -13.74106 -12.82568 -12.77547 -12.53181 -12.21576 -11.23355 -11.13139 -10.97473 -10.62660 -10.59845 -9.66049 -9.51044 -9.36691 -9.13360 -8.93380 -8.46071 -7.26301 -6.11488 -4.14486 1.28791 1.38822 2.01486 3.27227 3.30114 3.34740 3.39605 3.70108 4.39980 5.03632 5.19544 5.25765 5.27622 5.53250 5.82901 5.98548 6.20624 6.32703 6.37626 6.72203 7.23948 7.50699 7.58381 7.61234 7.87544 8.22885 8.41772 8.91504 9.50477 11.00228 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.089227 B = 0.005393 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.731643 B = 5190.844026 C = 5478.824184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.287 4.287 3 C 0.091 3.909 4 N -0.558 5.558 5 C 0.336 3.664 6 N -0.683 5.683 7 C 0.136 3.864 8 C 0.011 3.989 9 C -0.520 4.520 10 H 0.061 0.939 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 S 0.053 5.947 18 H 0.064 0.936 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.167 0.833 22 H 0.411 0.589 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 0.307 0.012 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.411 4.411 3 C -0.060 4.060 4 N -0.285 5.285 5 C -0.037 4.037 6 N -0.320 5.320 7 C 0.012 3.988 8 C -0.026 4.026 9 C -0.559 4.559 10 H 0.079 0.921 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 S 0.302 5.698 18 H 0.083 0.917 19 H 0.089 0.911 20 H 0.080 0.920 21 H 0.184 0.816 22 H 0.248 0.752 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.606 -0.355 0.022 15.610 hybrid contribution 0.700 1.035 -0.013 1.249 sum -14.906 0.680 0.009 14.921 Atomic orbital electron populations 1.19984 0.87572 1.02355 1.01860 1.25085 1.00421 0.93538 1.22046 1.21303 0.86445 0.99373 0.98880 1.66459 1.17509 1.16168 1.28359 1.23741 0.91694 0.91387 0.96842 1.44719 1.00161 1.09977 1.77172 1.21804 0.84732 0.91393 1.00881 1.19352 0.89219 0.96156 0.97916 1.21057 0.90411 0.93080 1.51339 0.92116 1.25004 0.99077 0.95285 0.94962 1.69965 1.20327 1.12604 1.50368 0.86443 0.82049 0.81372 0.77632 1.19551 1.20917 1.20910 1.83783 0.98299 1.11679 1.76072 0.91741 0.91051 0.92021 0.81563 0.75215 0.92481 0.92479 0.95892 0.95895 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.41 36.01 0.37 -0.17 15 2 C -0.29 -3.80 6.58 -36.02 -0.24 -4.04 15 3 C 0.09 1.35 11.24 -19.14 -0.22 1.13 15 4 N -0.56 -10.22 10.14 -15.21 -0.15 -10.37 15 5 C 0.34 5.88 8.09 -87.68 -0.71 5.17 15 6 N -0.68 -12.47 5.71 -62.30 -0.36 -12.83 15 7 C 0.14 2.90 5.89 -4.05 -0.02 2.88 15 8 C 0.01 0.28 5.09 -27.88 -0.14 0.14 15 9 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 15 10 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -26.20 13.29 55.43 0.74 -25.46 15 13 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 15 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 S 0.05 0.75 23.21 -107.50 -2.50 -1.74 15 18 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 19 H 0.07 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 15 21 H 0.17 1.99 8.06 -52.49 -0.42 1.56 15 22 H 0.41 6.72 8.60 -40.82 -0.35 6.37 15 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -30.24 254.78 -8.09 -38.33 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.27 Total: -0.05 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.36 Total: -8.08 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.23 Total: -48.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.74 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.24 -8.09 -38.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120771.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.282 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds