Wall clock time and date at job start Sun Mar 29 2020 21:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 5 5 C 1.29688 * 116.87094 * 359.97438 * 4 3 2 6 6 N 1.38611 * 124.95101 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00198 * 359.97438 * 6 5 4 8 8 C 1.52997 * 109.47272 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.47137 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99549 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00430 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99604 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46832 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46951 * 119.99939 * 13 11 9 16 16 H 1.48502 * 109.46962 * 240.00093 * 13 11 9 17 17 S 1.70966 * 110.09929 * 359.73162 * 5 4 3 18 18 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 21 21 H 1.07998 * 122.70777 * 359.97438 * 3 2 1 22 22 H 0.97006 * 120.00076 * 179.97438 * 6 5 4 23 23 H 1.09000 * 109.46952 * 299.99379 * 7 6 5 24 24 H 1.08996 * 109.47571 * 59.99584 * 7 6 5 25 25 H 1.09004 * 109.47100 * 299.99922 * 8 7 6 26 26 H 1.09002 * 109.47691 * 59.99658 * 8 7 6 27 27 H 0.97000 * 119.99813 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 7 3.5850 0.8188 -0.0005 5 6 3.9315 -0.4309 -0.0005 6 7 5.2385 -0.8925 -0.0005 7 6 6.3517 0.0597 -0.0011 8 6 7.6769 -0.7049 -0.0003 9 6 8.8221 0.2748 -0.0004 10 1 8.6245 1.3366 -0.0013 11 6 10.1221 -0.1845 0.0008 12 7 10.3628 -1.4774 0.0025 13 14 11.5417 1.0299 0.0001 14 1 11.0077 2.4155 -0.0012 15 1 12.3722 0.8211 1.2132 16 1 12.3735 0.8182 -1.2118 17 16 2.5413 -1.4260 0.0078 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 1.8967 2.0853 -0.0004 22 1 5.4160 -1.8462 0.0000 23 1 6.2937 0.6859 -0.8914 24 1 6.2940 0.6869 0.8885 25 1 7.7347 -1.3308 0.8902 26 1 7.7350 -1.3323 -0.8897 27 1 11.2775 -1.8004 0.0037 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120771.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:55 Heat of formation + Delta-G solvation = 10.758617 kcal Electronic energy + Delta-G solvation = -11275.738195 eV Core-core repulsion = 9158.978480 eV Total energy + Delta-G solvation = -2116.759715 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55140 -37.45865 -35.13298 -33.06334 -31.38586 -27.48624 -26.44339 -24.46095 -23.06251 -20.45372 -19.37999 -18.50472 -17.18271 -16.47041 -16.32844 -15.74520 -15.31609 -15.18622 -14.32431 -13.82737 -13.73330 -13.44592 -13.22364 -12.98458 -12.49962 -12.37449 -11.98740 -11.62463 -11.41469 -10.97191 -10.58782 -10.44145 -10.08724 -8.54652 -8.26048 -6.36829 0.09988 0.17940 0.87867 1.40344 1.41001 1.54547 2.08421 2.30592 2.46693 3.08834 3.80997 4.27256 4.42805 4.46208 4.49316 4.83475 4.86275 4.97903 5.09332 5.30151 5.41770 5.55305 5.70327 5.94775 6.12710 6.27245 6.76966 7.16071 7.32734 8.86312 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.089227 B = 0.005393 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.731643 B = 5190.844026 C = 5478.824184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.267 4.267 3 C 0.060 3.940 4 N -0.589 5.589 5 C 0.299 3.701 6 N -0.692 5.692 7 C 0.163 3.837 8 C 0.021 3.979 9 C -0.544 4.544 10 H 0.061 0.939 11 C 0.005 3.995 12 N -0.928 5.928 13 Si 0.968 3.032 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.276 1.276 17 S 0.100 5.900 18 H 0.080 0.920 19 H 0.092 0.908 20 H 0.073 0.927 21 H 0.191 0.809 22 H 0.417 0.583 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.750 0.853 0.015 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.391 4.391 3 C -0.089 4.089 4 N -0.316 5.316 5 C -0.072 4.072 6 N -0.331 5.331 7 C 0.038 3.962 8 C -0.016 4.016 9 C -0.583 4.583 10 H 0.079 0.921 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.792 3.208 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.202 1.202 17 S 0.348 5.652 18 H 0.099 0.901 19 H 0.110 0.890 20 H 0.092 0.908 21 H 0.208 0.792 22 H 0.255 0.745 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.216 0.194 0.025 17.217 hybrid contribution 0.981 0.831 -0.016 1.286 sum -16.235 1.025 0.010 16.267 Atomic orbital electron populations 1.20193 0.84395 1.04006 1.03382 1.25761 1.02373 0.92658 1.18288 1.21687 0.85515 1.01113 1.00602 1.66435 1.19784 1.17260 1.28135 1.23873 0.92084 0.92443 0.98778 1.44324 1.00144 1.09588 1.79081 1.21171 0.84366 0.91031 0.99674 1.19149 0.90777 0.95549 0.96148 1.21471 0.91721 0.93616 1.51443 0.92111 1.25911 1.01901 0.97152 0.94377 1.70073 1.21182 1.14440 1.51076 0.85357 0.78447 0.79106 0.77900 1.18797 1.20207 1.20197 1.83613 0.96060 1.10905 1.74592 0.90137 0.88977 0.90789 0.79226 0.74494 0.93655 0.93656 0.97558 0.97556 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.41 71.24 0.74 -0.14 15 2 C -0.27 -6.34 6.58 24.58 0.16 -6.18 15 3 C 0.06 1.67 11.24 83.54 0.94 2.61 15 4 N -0.59 -21.36 10.14 -202.03 -2.05 -23.41 15 5 C 0.30 10.42 8.09 179.32 1.45 11.87 15 6 N -0.69 -25.83 5.71 -351.03 -2.01 -27.83 15 7 C 0.16 7.20 5.89 86.38 0.51 7.71 15 8 C 0.02 1.11 5.09 29.85 0.15 1.26 15 9 C -0.54 -30.78 9.11 25.60 0.23 -30.55 15 10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 15 11 C 0.01 0.29 5.46 84.65 0.46 0.76 15 12 N -0.93 -55.15 13.29 21.45 0.28 -54.87 15 13 Si 0.97 43.96 29.54 68.60 2.03 45.99 15 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 17 S 0.10 2.62 23.21 -56.49 -1.31 1.31 15 18 H 0.08 1.00 8.14 -2.39 -0.02 0.98 15 19 H 0.09 1.04 8.14 -2.39 -0.02 1.02 15 20 H 0.07 0.95 8.14 -2.38 -0.02 0.93 15 21 H 0.19 4.14 8.06 -2.91 -0.02 4.12 15 22 H 0.42 14.03 8.60 -92.70 -0.80 13.24 15 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.01 0.33 8.14 -2.39 -0.02 0.31 15 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 15 27 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -64.95 254.78 1.97 -62.98 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.37 Total: 8.50 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.65 Total: -12.66 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -3.77 Total: -106.11 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.31 Total: 1.31 kcal Total: -64.95 1.97 -62.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120771.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.742 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds