Wall clock time and date at job start Sun Mar 29 2020 21:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47764 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47194 * 300.00348 * 3 2 1 6 6 H 1.48508 * 109.47354 * 60.00029 * 3 2 1 7 7 C 1.37885 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.50693 * 109.47494 * 180.02562 * 9 7 2 11 11 C 1.38729 * 120.03521 * 269.72680 * 10 9 7 12 12 O 1.35901 * 120.05107 * 0.25167 * 11 10 9 13 13 C 1.38728 * 119.90312 * 180.27279 * 11 10 9 14 14 C 1.38179 * 119.96877 * 359.97438 * 13 11 10 15 15 C 1.38220 * 120.06533 * 0.02562 * 14 13 11 16 16 C 1.38245 * 120.03482 * 90.00037 * 10 9 7 17 17 Cl 1.73603 * 119.98308 * 359.74939 * 16 10 9 18 18 H 0.97003 * 120.00042 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46942 * 59.99972 * 9 7 2 20 20 H 1.09002 * 109.47057 * 300.00313 * 9 7 2 21 21 H 0.96701 * 113.99793 * 89.99604 * 12 11 10 22 22 H 1.07998 * 120.01762 * 180.02562 * 13 11 10 23 23 H 1.07996 * 119.96228 * 179.97438 * 14 13 11 24 24 H 1.08000 * 119.94533 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6771 -4.1762 -1.2015 12 8 2.2364 -3.6613 -2.3795 13 6 3.5741 -5.2344 -1.1983 14 6 4.0213 -5.7566 0.0003 15 6 3.5752 -5.2260 1.1962 16 6 2.6798 -4.1706 1.1963 17 17 2.1211 -3.5069 2.7000 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.7825 -2.9408 -2.7226 22 1 3.9235 -5.6493 -2.1322 23 1 4.7193 -6.5806 0.0027 24 1 3.9256 -5.6359 2.1319 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261128551.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:44 Heat of formation + Delta-G solvation = -57.891563 kcal Electronic energy + Delta-G solvation = -11719.681860 eV Core-core repulsion = 9429.775698 eV Total energy + Delta-G solvation = -2289.906162 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.71336 -37.84388 -36.82167 -35.43082 -32.97458 -30.67913 -28.82778 -25.29505 -23.43504 -22.16808 -19.22993 -18.44197 -17.18530 -16.96428 -16.53273 -15.92254 -15.24252 -14.50498 -14.34423 -13.73684 -13.54733 -13.30394 -12.81646 -12.66828 -12.36023 -12.15476 -12.04980 -11.60113 -11.50079 -11.10845 -10.56733 -9.49851 -9.42962 -8.16659 -6.28473 0.24279 0.40841 1.36926 1.39246 1.40541 1.52631 2.40123 2.68775 3.15430 3.48542 4.06595 4.18594 4.21941 4.54002 4.79768 5.00171 5.16380 5.40156 5.41546 5.45650 5.77019 5.80259 5.85817 6.17954 6.82632 6.91290 7.38767 8.93640 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.011849 C = 0.009768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.450930 B = 2362.504456 C = 2865.748155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.061 3.939 10 C -0.096 4.096 11 C 0.093 3.907 12 O -0.505 6.505 13 C -0.138 4.138 14 C -0.101 4.101 15 C -0.121 4.121 16 C -0.043 4.043 17 Cl -0.079 7.079 18 H 0.263 0.737 19 H 0.003 0.997 20 H 0.012 0.988 21 H 0.402 0.598 22 H 0.158 0.842 23 H 0.176 0.824 24 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 -9.643 0.003 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.098 4.098 11 C 0.048 3.952 12 O -0.316 6.316 13 C -0.156 4.156 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.070 4.070 17 Cl -0.050 7.050 18 H 0.072 0.928 19 H 0.021 0.979 20 H 0.030 0.970 21 H 0.260 0.740 22 H 0.175 0.825 23 H 0.193 0.807 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.826 -9.885 0.189 13.254 hybrid contribution 0.040 1.646 0.129 1.651 sum 8.867 -8.239 0.318 12.108 Atomic orbital electron populations 1.70102 1.07712 1.27603 1.51573 1.25840 0.95607 1.02806 0.94816 0.85453 0.79090 0.79135 0.77710 1.18676 1.20229 1.20762 1.21166 0.92598 0.90651 1.50436 0.92901 1.17979 0.92799 0.90567 0.96273 1.20755 0.99308 0.97270 0.92436 1.18454 0.96420 0.95886 0.84435 1.84677 1.56654 1.55314 1.34993 1.21751 0.96381 0.96668 1.00790 1.21290 1.00116 1.00530 0.89898 1.21346 0.96692 0.94896 1.01008 1.20914 1.01291 0.98522 0.86238 1.98326 1.88943 1.86027 1.31737 0.92799 0.97892 0.96962 0.74043 0.82472 0.80686 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 14 2 C 0.01 0.42 5.46 84.66 0.46 0.88 14 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 14 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 14 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 14 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 14 7 C -0.51 -28.75 9.09 25.60 0.23 -28.52 14 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 14 9 C 0.06 3.31 4.48 29.10 0.13 3.44 14 10 C -0.10 -4.29 5.09 -19.75 -0.10 -4.39 14 11 C 0.09 3.54 6.68 22.50 0.15 3.69 14 12 O -0.50 -19.27 12.55 -92.43 -1.16 -20.43 14 13 C -0.14 -3.88 9.99 22.37 0.22 -3.66 14 14 C -0.10 -2.43 10.04 22.25 0.22 -2.21 14 15 C -0.12 -3.51 9.83 22.30 0.22 -3.29 14 16 C -0.04 -1.68 6.31 22.31 0.14 -1.54 14 17 Cl -0.08 -3.18 27.29 -2.72 -0.07 -3.25 14 18 H 0.26 15.05 8.31 -92.71 -0.77 14.28 14 19 H 0.00 0.17 7.53 -2.39 -0.02 0.15 14 20 H 0.01 0.71 6.91 -2.39 -0.02 0.70 14 21 H 0.40 12.55 9.06 -74.06 -0.67 11.88 14 22 H 0.16 3.38 8.06 -2.91 -0.02 3.35 14 23 H 0.18 2.57 8.06 -2.91 -0.02 2.54 14 24 H 0.16 3.53 8.06 -2.91 -0.02 3.51 14 Total: -1.00 -67.92 234.67 3.31 -64.61 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.55 Total: 4.69 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 1.68 Total: -35.59 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.28 Total: -56.34 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.16 Total: -20.43 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.07 Total: -3.25 kcal Total: -67.92 3.31 -64.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128551.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.716 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds