Wall clock time and date at job start Sun Mar 29 2020 21:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 5 5 C 1.29688 * 116.87094 * 359.97438 * 4 3 2 6 6 N 1.38611 * 124.95101 * 180.02562 * 5 4 3 7 7 C 1.46507 * 120.00094 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00198 * 359.97438 * 6 5 4 9 9 C 1.50699 * 109.47537 * 89.99735 * 8 6 5 10 10 H 1.08000 * 119.99820 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00343 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00361 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46950 * 59.99409 * 13 11 9 15 15 H 1.48497 * 109.47517 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47115 * 300.00225 * 13 11 9 17 17 S 1.70966 * 110.09929 * 359.73162 * 5 4 3 18 18 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 21 21 H 1.07998 * 122.70777 * 359.97438 * 3 2 1 22 22 H 1.09002 * 109.47013 * 90.00012 * 7 6 5 23 23 H 1.08997 * 109.47324 * 210.00724 * 7 6 5 24 24 H 1.09006 * 109.46520 * 330.00315 * 7 6 5 25 25 H 1.09002 * 109.47262 * 209.99657 * 8 6 5 26 26 H 1.09001 * 109.46766 * 329.99235 * 8 6 5 27 27 H 0.97005 * 119.99878 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 7 3.5850 0.8188 -0.0005 5 6 3.9315 -0.4309 -0.0005 6 7 5.2385 -0.8925 -0.0005 7 6 5.5067 -2.3329 0.0002 8 6 6.3517 0.0597 -0.0011 9 6 6.7337 0.3871 1.4194 10 1 6.2003 -0.0684 2.2407 11 6 7.7634 1.2687 1.6708 12 7 8.4127 1.8237 0.6707 13 14 8.2365 1.6750 3.4316 14 1 8.6488 0.4325 4.1326 15 1 9.3642 2.6411 3.4309 16 1 7.0719 2.2747 4.1312 17 16 2.5413 -1.4260 0.0078 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 1.8967 2.0853 -0.0004 22 1 5.5730 -2.6905 -1.0274 23 1 6.4481 -2.5269 0.5140 24 1 4.6982 -2.8526 0.5144 25 1 7.2063 -0.3806 -0.5148 26 1 6.0492 0.9719 -0.5155 27 1 9.1370 2.4443 0.8475 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261162849.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:57 Heat of formation + Delta-G solvation = 46.482714 kcal Electronic energy + Delta-G solvation = -11800.137884 eV Core-core repulsion = 9684.927282 eV Total energy + Delta-G solvation = -2115.210602 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91507 -36.08196 -32.67896 -31.58231 -28.01284 -27.01969 -24.50068 -23.58820 -21.61077 -18.58483 -17.47969 -16.48584 -15.47143 -14.69112 -14.50757 -13.85466 -13.69185 -13.41812 -12.56894 -12.34363 -12.25340 -12.17550 -11.80072 -11.23006 -10.94792 -10.61714 -10.56007 -10.15671 -9.85786 -8.93586 -8.67886 -8.55907 -8.44419 -6.74378 -6.02669 -4.10583 1.66620 1.79937 2.38363 3.31281 3.35578 3.38887 3.71098 3.81171 4.43126 5.28204 5.33463 5.50006 5.53289 5.64377 5.76680 5.82977 6.06905 6.10082 6.34527 6.74533 6.87171 7.37785 7.72773 7.89223 8.05416 8.20404 8.78248 8.93678 9.53782 11.02070 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.041978 B = 0.008686 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.862062 B = 3222.710412 C = 3507.548062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.304 4.304 3 C 0.098 3.902 4 N -0.548 5.548 5 C 0.351 3.649 6 N -0.563 5.563 7 C 0.095 3.905 8 C 0.257 3.743 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 S 0.027 5.973 18 H 0.059 0.941 19 H 0.067 0.933 20 H 0.057 0.943 21 H 0.163 0.837 22 H 0.049 0.951 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.048 0.952 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 -6.418 -1.718 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.428 4.428 3 C -0.053 4.053 4 N -0.273 5.273 5 C -0.020 4.020 6 N -0.279 5.279 7 C -0.049 4.049 8 C 0.137 3.863 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 S 0.274 5.726 18 H 0.078 0.922 19 H 0.086 0.914 20 H 0.076 0.924 21 H 0.180 0.820 22 H 0.068 0.932 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.159 -7.046 -1.761 12.489 hybrid contribution 0.108 1.189 1.036 1.580 sum -10.051 -5.858 -0.725 11.656 Atomic orbital electron populations 1.19906 0.88025 1.01934 1.01371 1.24954 0.99971 0.93687 1.24167 1.21325 0.86720 0.99113 0.98167 1.66470 1.16649 1.16109 1.28085 1.23667 0.91056 0.90801 0.96442 1.46730 1.01163 1.06516 1.73452 1.21686 1.02419 0.79852 1.00909 1.19421 0.81581 0.87740 0.97602 1.21389 1.16477 1.26439 0.92190 0.92567 1.24908 0.96052 0.95547 0.97406 1.69923 1.22686 1.30012 1.30758 0.86554 0.77991 0.78176 0.84669 1.20275 1.21160 1.20200 1.83445 0.99297 1.12631 1.77229 0.92190 0.91411 0.92408 0.82029 0.93224 0.89760 0.92560 0.94770 0.93350 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.63 10.41 36.01 0.37 -0.26 15 2 C -0.30 -5.00 6.58 -36.02 -0.24 -5.24 15 3 C 0.10 1.84 11.24 -19.14 -0.22 1.63 15 4 N -0.55 -12.58 9.82 -15.21 -0.15 -12.73 15 5 C 0.35 7.60 7.74 -87.68 -0.68 6.92 15 6 N -0.56 -12.42 2.96 -185.30 -0.55 -12.97 15 7 C 0.10 1.61 10.41 59.85 0.62 2.24 15 8 C 0.26 6.73 5.28 -5.20 -0.03 6.71 15 9 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 15 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 11 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 12 N -0.89 -26.45 13.29 55.43 0.74 -25.71 15 13 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 15 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 S 0.03 0.46 21.68 -107.50 -2.33 -1.87 15 18 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.16 2.56 8.06 -52.49 -0.42 2.14 15 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.08 1.41 8.07 -51.93 -0.42 0.99 15 24 H 0.06 0.85 7.04 -51.93 -0.37 0.48 15 25 H 0.03 0.90 8.07 -51.93 -0.42 0.49 15 26 H 0.05 1.41 7.62 -51.93 -0.40 1.01 15 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 252.65 15.07 3.81 3.81 Total: -1.00 -31.40 252.65 -7.34 -38.74 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -3.26 Total: -4.62 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.58 Total: -1.53 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.04 Total: -51.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.33 Total: -1.87 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.40 -7.34 -38.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162849.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.223 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds