Wall clock time and date at job start Sun Mar 29 2020 21:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 5 5 C 1.29688 * 116.87094 * 359.97438 * 4 3 2 6 6 N 1.38611 * 124.95101 * 180.02562 * 5 4 3 7 7 C 1.46507 * 120.00094 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00198 * 359.97438 * 6 5 4 9 9 C 1.50699 * 109.47537 * 89.99735 * 8 6 5 10 10 H 1.08000 * 119.99820 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00343 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00361 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46950 * 59.99409 * 13 11 9 15 15 H 1.48497 * 109.47517 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47115 * 300.00225 * 13 11 9 17 17 S 1.70966 * 110.09929 * 359.73162 * 5 4 3 18 18 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 21 21 H 1.07998 * 122.70777 * 359.97438 * 3 2 1 22 22 H 1.09002 * 109.47013 * 90.00012 * 7 6 5 23 23 H 1.08997 * 109.47324 * 210.00724 * 7 6 5 24 24 H 1.09006 * 109.46520 * 330.00315 * 7 6 5 25 25 H 1.09002 * 109.47262 * 209.99657 * 8 6 5 26 26 H 1.09001 * 109.46766 * 329.99235 * 8 6 5 27 27 H 0.97005 * 119.99878 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 7 3.5850 0.8188 -0.0005 5 6 3.9315 -0.4309 -0.0005 6 7 5.2385 -0.8925 -0.0005 7 6 5.5067 -2.3329 0.0002 8 6 6.3517 0.0597 -0.0011 9 6 6.7337 0.3871 1.4194 10 1 6.2003 -0.0684 2.2407 11 6 7.7634 1.2687 1.6708 12 7 8.4127 1.8237 0.6707 13 14 8.2365 1.6750 3.4316 14 1 8.6488 0.4325 4.1326 15 1 9.3642 2.6411 3.4309 16 1 7.0719 2.2747 4.1312 17 16 2.5413 -1.4260 0.0078 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 1.8967 2.0853 -0.0004 22 1 5.5730 -2.6905 -1.0274 23 1 6.4481 -2.5269 0.5140 24 1 4.6982 -2.8526 0.5144 25 1 7.2063 -0.3806 -0.5148 26 1 6.0492 0.9719 -0.5155 27 1 9.1370 2.4443 0.8475 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261162849.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:57 Heat of formation + Delta-G solvation = 26.838468 kcal Electronic energy + Delta-G solvation = -11800.989722 eV Core-core repulsion = 9684.927282 eV Total energy + Delta-G solvation = -2116.062440 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.43325 -37.69608 -34.77428 -32.86763 -29.95479 -28.40003 -26.09769 -25.27879 -23.22557 -20.15780 -18.92967 -18.63208 -17.05647 -16.57928 -16.08250 -15.42452 -15.16759 -14.76069 -14.12664 -13.66877 -13.63536 -13.50536 -13.27843 -13.18577 -12.80078 -12.56086 -12.15979 -11.87227 -11.80242 -10.63717 -10.55934 -10.20814 -9.97099 -8.44370 -8.03817 -6.35548 0.21653 0.33571 0.97765 1.36372 1.39906 1.47577 2.19456 2.29610 2.41880 3.08307 3.88640 4.30362 4.34179 4.50080 4.55268 4.76903 4.88562 4.92727 5.06743 5.12497 5.22274 5.45681 5.65665 6.01594 6.13114 6.32129 6.73989 7.29971 7.36596 8.85233 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.041978 B = 0.008686 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.862062 B = 3222.710412 C = 3507.548062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.282 4.282 3 C 0.060 3.940 4 N -0.598 5.598 5 C 0.307 3.693 6 N -0.582 5.582 7 C 0.094 3.906 8 C 0.277 3.723 9 C -0.538 4.538 10 H 0.047 0.953 11 C 0.012 3.988 12 N -0.927 5.927 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.279 1.279 17 S 0.095 5.905 18 H 0.079 0.921 19 H 0.086 0.914 20 H 0.073 0.927 21 H 0.181 0.819 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.022 0.978 26 H 0.007 0.993 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 -7.498 -0.873 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.405 4.405 3 C -0.089 4.089 4 N -0.324 5.324 5 C -0.062 4.062 6 N -0.300 5.300 7 C -0.048 4.048 8 C 0.154 3.846 9 C -0.577 4.577 10 H 0.066 0.934 11 C -0.187 4.187 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.204 1.204 17 S 0.342 5.658 18 H 0.098 0.902 19 H 0.105 0.895 20 H 0.092 0.908 21 H 0.198 0.802 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.071 -8.153 -0.920 14.595 hybrid contribution 0.498 1.498 0.718 1.735 sum -11.573 -6.654 -0.202 13.351 Atomic orbital electron populations 1.20128 0.84406 1.03690 1.03185 1.25706 1.02213 0.92888 1.19739 1.21633 0.85814 1.00889 1.00553 1.66433 1.19344 1.18065 1.28567 1.23939 0.92095 0.91963 0.98224 1.46565 1.00706 1.07458 1.75228 1.21870 1.03002 0.77415 1.02559 1.18794 0.82589 0.87259 0.95939 1.21621 1.16526 1.26623 0.92926 0.93449 1.25777 0.95959 0.95291 1.01689 1.70040 1.23185 1.30560 1.32919 0.85511 0.77595 0.78468 0.79466 1.18786 1.20248 1.20447 1.83085 0.96066 1.11038 1.75583 0.90195 0.89527 0.90774 0.80238 0.91071 0.90166 0.90506 0.95977 0.97438 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.08 10.41 71.24 0.74 -0.34 15 2 C -0.28 -8.54 6.58 24.58 0.16 -8.38 15 3 C 0.06 2.22 11.24 83.54 0.94 3.16 15 4 N -0.60 -27.98 9.82 -202.03 -1.98 -29.96 15 5 C 0.31 13.34 7.74 179.32 1.39 14.73 15 6 N -0.58 -26.17 2.96 -740.17 -2.19 -28.36 15 7 C 0.09 3.12 10.41 127.77 1.33 4.45 15 8 C 0.28 15.16 5.28 85.63 0.45 15.62 15 9 C -0.54 -31.30 9.39 25.60 0.24 -31.06 15 10 H 0.05 2.77 7.81 -2.91 -0.02 2.75 15 11 C 0.01 0.69 5.46 84.65 0.46 1.15 15 12 N -0.93 -56.14 13.29 21.45 0.28 -55.86 15 13 Si 0.97 45.28 29.54 68.60 2.03 47.31 15 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 17 S 0.09 3.01 21.68 -56.49 -1.22 1.79 15 18 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 19 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.07 1.27 8.14 -2.38 -0.02 1.25 15 21 H 0.18 5.58 8.06 -2.91 -0.02 5.56 15 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.08 2.68 8.07 -2.39 -0.02 2.66 15 24 H 0.08 2.18 7.04 -2.38 -0.02 2.16 15 25 H 0.02 1.24 8.07 -2.39 -0.02 1.22 15 26 H 0.01 0.46 7.62 -2.39 -0.02 0.45 15 27 H 0.27 15.20 8.31 -92.70 -0.77 14.43 15 Total: -1.00 -69.48 252.65 3.78 -65.70 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.15 Total: 0.05 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.72 Total: -0.67 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.89 Total: -114.18 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.22 Total: 1.79 kcal Total: -69.48 3.78 -65.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162849.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.541 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds