Wall clock time and date at job start Sun Mar 29 2020 21:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37407 * 123.35597 * 2 1 4 4 C 1.33874 * 115.10956 * 179.97438 * 3 2 1 5 5 S 1.70619 * 110.97430 * 359.75945 * 4 3 2 6 6 C 1.36811 * 123.36359 * 179.97438 * 2 1 3 7 7 C 1.46331 * 125.46587 * 359.97438 * 6 2 1 8 8 O 1.21664 * 120.00244 * 0.02562 * 7 6 2 9 9 O 1.34899 * 120.00035 * 179.97438 * 7 6 2 10 10 C 1.34864 * 117.00039 * 180.02562 * 9 7 6 11 11 H 1.07991 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.38784 * 119.99972 * 179.73081 * 10 9 7 13 13 N 1.31442 * 120.00115 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99827 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47202 * 59.99494 * 14 12 10 16 16 H 1.48505 * 109.46859 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46646 * 299.99281 * 14 12 10 18 18 H 1.09001 * 109.47540 * 270.02868 * 1 2 3 19 19 H 1.09000 * 109.47663 * 30.03156 * 1 2 3 20 20 H 1.09003 * 109.46588 * 150.02430 * 1 2 3 21 21 H 1.07996 * 122.44729 * 359.94531 * 3 2 1 22 22 H 1.08008 * 124.51499 * 179.97438 * 4 3 2 23 23 H 0.96995 * 120.00120 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2625 1.1477 0.0000 4 6 3.5874 0.9557 0.0005 5 16 3.9633 -0.7085 0.0078 6 6 2.2594 -1.1426 0.0005 7 6 1.7309 -2.5072 0.0017 8 8 0.5287 -2.6940 0.0018 9 8 2.5767 -3.5581 0.0015 10 6 2.0245 -4.7885 0.0021 11 1 0.9502 -4.8981 0.0022 12 6 2.8369 -5.9137 -0.0036 13 7 4.1445 -5.7802 -0.0101 14 14 2.0720 -7.6179 -0.0036 15 1 1.2253 -7.7805 -1.2126 16 1 3.1467 -8.6428 -0.0109 17 1 1.2361 -7.7852 1.2124 18 1 -0.3634 0.0005 1.0276 19 1 -0.3634 0.8897 -0.5143 20 1 -0.3632 -0.8902 -0.5135 21 1 1.8199 2.1328 -0.0009 22 1 4.3207 1.7487 0.0002 23 1 4.7123 -6.5666 -0.0145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306148679.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:25 Heat of formation + Delta-G solvation = -72.833489 kcal Electronic energy + Delta-G solvation = -11582.328076 eV Core-core repulsion = 9293.817690 eV Total energy + Delta-G solvation = -2288.510386 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.06295 -39.09926 -37.08258 -34.34394 -31.82795 -29.72144 -27.32160 -24.58388 -23.05685 -20.03720 -19.76783 -19.02906 -17.40901 -16.67991 -16.49668 -16.22766 -15.50562 -14.74719 -14.32948 -14.10491 -13.61342 -13.26766 -13.21236 -13.00006 -12.66931 -12.40983 -12.17073 -12.11105 -11.65801 -11.02288 -10.73285 -9.80717 -9.39814 -8.57802 -6.35615 -0.47334 0.58583 1.11517 1.31902 1.32711 1.49352 1.49773 2.08429 2.09041 2.74181 2.97061 3.99924 4.22414 4.38165 4.65560 4.75363 4.79206 5.01908 5.09029 5.11905 5.45581 5.57952 5.79262 6.56224 6.85841 7.68081 8.62697 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.051427 B = 0.009142 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.329617 B = 3061.902260 C = 3591.078036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.030 4.030 3 C -0.152 4.152 4 C -0.216 4.216 5 S 0.214 5.786 6 C -0.287 4.287 7 C 0.463 3.537 8 O -0.566 6.566 9 O -0.237 6.237 10 C -0.421 4.421 11 H 0.084 0.916 12 C -0.003 4.003 13 N -0.898 5.898 14 Si 1.021 2.979 15 H -0.261 1.261 16 H -0.258 1.258 17 H -0.261 1.261 18 H 0.076 0.924 19 H 0.100 0.900 20 H 0.058 0.942 21 H 0.184 0.816 22 H 0.211 0.789 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 11.882 0.009 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.046 4.046 3 C -0.182 4.182 4 C -0.353 4.353 5 S 0.483 5.517 6 C -0.405 4.405 7 C 0.312 3.688 8 O -0.466 6.466 9 O -0.146 6.146 10 C -0.497 4.497 11 H 0.102 0.898 12 C -0.204 4.204 13 N -0.535 5.535 14 Si 0.839 3.161 15 H -0.185 1.185 16 H -0.181 1.181 17 H -0.185 1.185 18 H 0.095 0.905 19 H 0.119 0.881 20 H 0.077 0.923 21 H 0.201 0.799 22 H 0.228 0.772 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.050 10.877 0.016 10.928 hybrid contribution -1.550 -0.135 0.007 1.556 sum -0.500 10.742 0.023 10.753 Atomic orbital electron populations 1.20708 0.88384 1.03748 1.03121 1.19955 0.98543 0.90410 0.95710 1.20096 0.92456 0.99545 1.06119 1.25899 1.01457 1.01667 1.06303 1.83584 1.02657 0.98544 1.66886 1.23615 0.99784 0.93809 1.23281 1.20270 0.85010 0.85871 0.77648 1.90576 1.16918 1.86525 1.52594 1.83966 1.38821 1.14906 1.76886 1.21475 0.93622 0.79664 1.54947 0.89789 1.26611 0.95748 1.03534 0.94516 1.70071 1.04448 1.32896 1.46100 0.84645 0.78039 0.73545 0.79845 1.18542 1.18125 1.18512 0.90504 0.88095 0.92323 0.79923 0.77233 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 9.55 71.24 0.68 -2.52 14 2 C -0.03 -1.05 5.91 -20.40 -0.12 -1.17 14 3 C -0.15 -3.81 9.97 21.08 0.21 -3.60 14 4 C -0.22 -5.18 10.92 66.83 0.73 -4.45 14 5 S 0.21 7.51 22.92 -56.49 -1.29 6.21 14 6 C -0.29 -12.52 6.45 24.04 0.16 -12.37 14 7 C 0.46 25.68 7.86 69.93 0.55 26.23 14 8 O -0.57 -32.80 13.50 19.30 0.26 -32.54 14 9 O -0.24 -14.79 9.60 9.52 0.09 -14.70 14 10 C -0.42 -26.48 9.65 67.95 0.66 -25.82 14 11 H 0.08 5.31 6.86 -2.92 -0.02 5.29 14 12 C 0.00 -0.20 5.50 84.88 0.47 0.27 14 13 N -0.90 -53.93 13.67 21.63 0.30 -53.64 14 14 Si 1.02 44.09 29.55 68.60 2.03 46.12 14 15 H -0.26 -10.84 7.11 99.48 0.71 -10.14 14 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 17 H -0.26 -10.82 7.11 99.48 0.71 -10.12 14 18 H 0.08 2.31 8.14 -2.39 -0.02 2.29 14 19 H 0.10 2.29 8.14 -2.39 -0.02 2.27 14 20 H 0.06 2.30 6.02 -2.39 -0.01 2.28 14 21 H 0.18 3.00 8.06 -2.91 -0.02 2.97 14 22 H 0.21 3.08 8.06 -2.91 -0.02 3.06 14 23 H 0.28 15.22 8.31 -92.71 -0.77 14.44 14 Total: -1.00 -75.01 229.95 5.94 -69.07 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.23 Total: 2.90 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.33 Total: -23.43 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.30 Total: -53.64 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: 0.35 Total: -47.24 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 7.51 SS G_CDS: -1.29 Total: 6.21 kcal Total: -75.01 5.94 -69.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306148679.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.759 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds