Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86796 * 120.00168 * 2 1 4 4 H 1.48498 * 109.46791 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47208 * 29.99694 * 3 2 1 6 6 H 1.48508 * 109.46991 * 149.99741 * 3 2 1 7 7 C 1.38867 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99991 * 180.02562 * 7 2 1 9 9 O 1.34803 * 119.99675 * 0.02562 * 7 2 1 10 10 C 1.34862 * 116.99290 * 179.97438 * 9 7 2 11 11 O 1.21633 * 120.00278 * 359.97438 * 10 9 7 12 12 C 1.46454 * 119.99445 * 180.27081 * 10 9 7 13 13 N 1.29828 * 119.56118 * 359.45557 * 12 10 9 14 14 N 1.39858 * 121.12134 * 179.88434 * 13 12 10 15 15 C 1.34741 * 120.34381 * 19.65044 * 14 13 12 16 16 O 1.21258 * 120.11842 * 179.49989 * 15 14 13 17 17 C 1.50772 * 119.76911 * 359.51868 * 15 14 13 18 18 C 1.50555 * 119.55449 * 179.71973 * 12 10 9 19 19 H 0.97002 * 119.99747 * 0.02562 * 1 2 3 20 20 H 0.97007 * 119.86096 * 199.43221 * 14 13 12 21 21 H 1.08999 * 109.51088 * 206.79181 * 17 15 14 22 22 H 1.08992 * 109.50862 * 86.63464 * 17 15 14 23 23 H 1.08999 * 109.44811 * 265.84615 * 18 12 10 24 24 H 1.08996 * 109.44395 * 25.79281 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4955 2.0462 -1.4001 5 1 1.4454 2.6526 0.7000 6 1 3.5455 1.4400 0.7001 7 6 2.0082 -1.2027 0.0005 8 1 3.0881 -1.2027 0.0010 9 8 1.3340 -2.3700 0.0005 10 6 2.0685 -3.5011 0.0005 11 8 3.2832 -3.4374 0.0001 12 6 1.4035 -4.8059 -0.0055 13 7 0.1066 -4.8638 0.0000 14 7 -0.5622 -6.0921 -0.0079 15 6 0.0759 -7.2170 0.3702 16 8 -0.5105 -8.2784 0.3705 17 6 1.5215 -7.1514 0.7934 18 6 2.2332 -6.0622 -0.0118 19 1 -0.4850 0.8401 -0.0004 20 1 -1.4912 -6.1345 -0.2839 21 1 1.9995 -8.1131 0.6068 22 1 1.5794 -6.9152 1.8559 23 1 2.3707 -6.4011 -1.0386 24 1 3.2055 -5.8571 0.4360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306283007.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = -100.223817 kcal Electronic energy + Delta-G solvation = -13569.555039 eV Core-core repulsion = 10869.396799 eV Total energy + Delta-G solvation = -2700.158240 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.75922 -40.86204 -38.45076 -37.29204 -34.38766 -34.26793 -32.50877 -27.94010 -26.70541 -25.11288 -22.69216 -20.12254 -19.92422 -19.05501 -18.39558 -17.28762 -17.17320 -16.61794 -16.49917 -16.18415 -15.28313 -14.66913 -14.41253 -13.77372 -13.70288 -13.43264 -13.08578 -12.67715 -12.38949 -12.17165 -12.03806 -11.98373 -11.38803 -10.82264 -10.72773 -10.18152 -8.58220 -6.34572 -0.27730 1.22203 1.28782 1.40271 1.46630 1.57120 2.00129 2.05135 2.45903 2.99196 3.06504 3.48945 3.85164 3.99155 4.12940 4.56968 4.72732 4.78312 5.09580 5.15811 5.44126 5.74950 6.37156 6.54478 6.83260 6.85177 7.65473 8.60854 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.066615 B = 0.007346 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.223101 B = 3810.778550 C = 4184.661815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.003 4.003 3 Si 1.023 2.977 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.095 0.905 9 O -0.215 6.215 10 C 0.439 3.561 11 O -0.555 6.555 12 C 0.113 3.887 13 N -0.209 5.209 14 N -0.555 5.555 15 C 0.496 3.504 16 O -0.555 6.555 17 C -0.132 4.132 18 C -0.096 4.096 19 H 0.282 0.718 20 H 0.438 0.562 21 H 0.151 0.849 22 H 0.122 0.878 23 H 0.119 0.881 24 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -8.168 0.489 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.205 4.205 3 Si 0.841 3.159 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.113 0.887 9 O -0.120 6.120 10 C 0.286 3.714 11 O -0.451 6.451 12 C -0.079 4.079 13 N -0.025 5.025 14 N -0.303 5.303 15 C 0.285 3.715 16 O -0.431 6.431 17 C -0.172 4.172 18 C -0.135 4.135 19 H 0.091 0.909 20 H 0.283 0.717 21 H 0.169 0.831 22 H 0.140 0.860 23 H 0.137 0.863 24 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.094 -8.168 0.558 8.450 hybrid contribution 0.112 0.254 -0.137 0.310 sum 2.206 -7.914 0.421 8.226 Atomic orbital electron populations 1.70088 1.07973 1.29822 1.44567 1.26714 0.96843 1.02674 0.94277 0.84546 0.77817 0.73929 0.79616 1.18391 1.18717 1.18131 1.21697 0.92752 0.80649 1.54070 0.88701 1.84041 1.39928 1.14010 1.74002 1.20393 0.85627 0.85035 0.80358 1.90683 1.14721 1.87559 1.52182 1.23957 0.90968 0.94402 0.98577 1.75107 1.10815 1.06515 1.10038 1.47095 1.15504 1.02606 1.65077 1.21885 0.91370 0.82652 0.75588 1.90746 1.69586 1.28913 1.53845 1.21936 0.89003 1.03016 1.03227 1.20999 1.00285 0.87740 1.04466 0.90883 0.71693 0.83075 0.85995 0.86316 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.01 13.67 21.64 0.30 -50.71 14 2 C 0.00 -0.14 5.50 84.91 0.47 0.32 14 3 Si 1.02 41.03 29.55 68.60 2.03 43.06 14 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 14 7 C -0.42 -23.98 9.65 67.97 0.66 -23.32 14 8 H 0.10 5.40 6.86 -2.91 -0.02 5.38 14 9 O -0.22 -12.27 9.52 10.53 0.10 -12.17 14 10 C 0.44 21.02 7.84 69.96 0.55 21.57 14 11 O -0.56 -27.57 15.48 19.40 0.30 -27.27 14 12 C 0.11 4.11 6.77 44.95 0.30 4.41 14 13 N -0.21 -7.76 11.52 -43.63 -0.50 -8.26 14 14 N -0.55 -16.54 6.61 -173.53 -1.15 -17.69 14 15 C 0.50 13.72 7.83 87.69 0.69 14.41 14 16 O -0.56 -18.01 17.94 -2.96 -0.05 -18.07 14 17 C -0.13 -2.70 6.20 29.87 0.19 -2.52 14 18 C -0.10 -2.35 5.85 29.81 0.17 -2.17 14 19 H 0.28 14.61 8.31 -92.71 -0.77 13.84 14 20 H 0.44 11.56 8.93 -213.47 -1.91 9.65 14 21 H 0.15 2.15 8.14 -2.39 -0.02 2.13 14 22 H 0.12 2.23 8.14 -2.39 -0.02 2.21 14 23 H 0.12 2.49 8.14 -2.39 -0.02 2.47 14 24 H 0.13 2.93 7.54 -2.39 -0.02 2.91 14 Total: -1.00 -70.74 231.30 3.39 -67.34 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -0.65 Total: 11.06 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 3.02 Total: 12.70 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -1.35 Total: -76.65 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: 0.35 Total: -57.51 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -70.74 3.39 -67.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306283007.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.881 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds