Wall clock time and date at job start Sun Mar 29 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 F 1.39898 * 110.89088 * 24.19604 * 3 2 1 5 5 C 1.55159 * 111.00485 * 260.31469 * 3 2 1 6 6 C 1.54320 * 102.94349 * 206.39009 * 5 3 2 7 7 N 1.47018 * 107.27210 * 22.19183 * 6 5 3 8 8 C 1.34784 * 125.64722 * 181.02498 * 7 6 5 9 9 O 1.21691 * 119.99730 * 180.02562 * 8 7 6 10 10 C 1.46373 * 119.99945 * 0.02562 * 8 7 6 11 11 H 1.07996 * 119.99859 * 0.02562 * 10 8 7 12 12 C 1.40045 * 119.99887 * 180.02562 * 10 8 7 13 13 N 1.30678 * 119.99861 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00061 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47312 * 90.00096 * 14 12 10 16 16 H 1.48507 * 109.46759 * 210.00091 * 14 12 10 17 17 H 1.48500 * 109.46937 * 329.99570 * 14 12 10 18 18 C 1.47421 * 108.70379 * 1.28563 * 7 6 5 19 19 H 1.08996 * 110.71852 * 88.02511 * 5 3 2 20 20 H 1.08998 * 110.86977 * 324.82380 * 5 3 2 21 21 H 1.09010 * 109.88205 * 262.77471 * 6 5 3 22 22 H 1.09002 * 109.88208 * 141.61136 * 6 5 3 23 23 H 0.97001 * 119.99621 * 179.97438 * 13 12 10 24 24 H 1.09005 * 110.36058 * 94.48410 * 18 7 6 25 25 H 1.08997 * 110.36930 * 216.80538 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 9 3.1073 -1.1913 -0.5357 5 6 3.1640 0.2446 1.4278 6 6 4.5453 0.8772 1.1574 7 7 4.5052 1.4513 -0.1954 8 6 5.5260 2.0782 -0.8133 9 8 5.3788 2.5164 -1.9390 10 6 6.8114 2.2318 -0.1303 11 1 6.9421 1.8425 0.8686 12 6 7.8719 2.8837 -0.7721 13 7 7.7138 3.3543 -1.9809 14 14 9.5126 3.0791 0.0993 15 1 10.3759 1.9093 -0.2026 16 1 10.1783 4.3203 -0.3716 17 1 9.2878 3.1635 1.5648 18 6 3.1618 1.2332 -0.7619 19 1 3.2698 -0.6970 1.9665 20 1 2.5257 0.9339 1.9806 21 1 5.3205 0.1128 1.2130 22 1 4.7429 1.6621 1.8875 23 1 8.4482 3.8061 -2.4252 24 1 2.5307 2.1048 -0.5877 25 1 3.2298 1.0202 -1.8287 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306348848.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:52 Heat of formation + Delta-G solvation = -49.160584 kcal Electronic energy + Delta-G solvation = -13724.472413 eV Core-core repulsion = 11038.901231 eV Total energy + Delta-G solvation = -2685.571183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.85921 -38.49091 -36.70478 -35.42093 -32.59416 -30.67744 -29.00754 -26.43635 -23.49478 -21.89446 -19.46271 -18.57797 -17.11693 -15.78879 -15.33669 -15.11143 -14.83335 -14.29204 -13.95894 -13.57474 -13.34510 -12.88557 -12.75798 -12.28847 -12.12356 -11.69192 -11.29713 -11.23085 -11.15089 -10.91311 -10.75274 -10.45235 -10.25580 -8.93546 -7.79961 -7.44363 -6.29649 -4.75142 2.42072 2.44189 3.09971 3.16542 3.19825 3.29809 4.01476 4.22356 4.31999 4.44625 4.48877 4.80922 5.24144 5.43680 5.63356 5.66571 6.03820 6.07185 6.25354 6.38160 7.08015 7.20883 7.35272 7.93428 8.24542 8.92260 9.28869 10.44511 10.63953 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.060602 B = 0.008017 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.917236 B = 3491.685934 C = 3713.387592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.202 3.798 3 C 0.203 3.797 4 F -0.169 7.169 5 C -0.141 4.141 6 C 0.120 3.880 7 N -0.643 5.643 8 C 0.572 3.428 9 O -0.571 6.571 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.086 3.914 13 N -0.765 5.765 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.109 3.891 19 H 0.098 0.902 20 H 0.096 0.904 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.270 0.730 24 H 0.073 0.927 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 -5.018 7.505 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.118 4.118 3 C 0.180 3.820 4 F -0.150 7.150 5 C -0.180 4.180 6 C -0.004 4.004 7 N -0.384 5.384 8 C 0.379 3.621 9 O -0.453 6.453 10 C -0.571 4.571 11 H 0.091 0.909 12 C -0.134 4.134 13 N -0.394 5.394 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.017 4.017 19 H 0.117 0.883 20 H 0.114 0.886 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.877 -4.650 6.637 10.011 hybrid contribution 1.144 -0.137 0.422 1.227 sum -4.734 -4.787 7.059 9.755 Atomic orbital electron populations 1.81162 1.12373 1.06393 1.07681 1.29035 0.94691 0.94319 0.93783 1.19157 0.80032 0.84705 0.98062 1.92975 1.87393 1.47063 1.87526 1.23348 0.98452 1.03510 0.92691 1.21671 0.94208 0.97661 0.86906 1.48810 1.10594 1.63442 1.15543 1.18117 0.82011 0.76694 0.85255 1.90635 1.82213 1.52612 1.19794 1.20852 0.94509 1.39347 1.02442 0.90944 1.25746 0.99907 0.93376 0.94386 1.70013 1.31680 1.26440 1.11244 0.86314 0.81609 0.78256 0.80287 1.19629 1.20414 1.18789 1.22300 0.87728 0.92411 0.99262 0.88336 0.88587 0.91412 0.91321 0.91879 0.90883 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.20 18.54 42.15 0.78 -5.42 15 2 C 0.20 2.85 14.48 -20.76 -0.30 2.55 15 3 C 0.20 2.89 1.55 -91.14 -0.14 2.75 15 4 F -0.17 -2.65 16.99 2.25 0.04 -2.61 15 5 C -0.14 -1.66 6.20 -24.90 -0.15 -1.81 15 6 C 0.12 1.90 6.05 -3.07 -0.02 1.88 15 7 N -0.64 -13.58 3.32 -172.04 -0.57 -14.15 15 8 C 0.57 15.59 7.78 -12.98 -0.10 15.49 15 9 O -0.57 -17.92 15.27 5.20 0.08 -17.85 15 10 C -0.53 -14.31 9.06 -35.63 -0.32 -14.64 15 11 H 0.07 1.75 7.16 -52.49 -0.38 1.37 15 12 C 0.09 2.30 5.50 -17.37 -0.10 2.21 15 13 N -0.77 -22.16 11.83 55.55 0.66 -21.51 15 14 Si 0.91 19.24 29.56 -169.99 -5.02 14.21 15 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 18 C 0.11 1.93 6.17 -2.41 -0.01 1.91 15 19 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 20 H 0.10 0.95 8.03 -51.93 -0.42 0.53 15 21 H 0.07 1.07 8.14 -51.92 -0.42 0.65 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 23 H 0.27 7.09 8.29 -40.82 -0.34 6.75 15 24 H 0.07 1.20 8.03 -51.93 -0.42 0.78 15 25 H 0.09 1.73 8.03 -51.93 -0.42 1.31 15 LS Contribution 237.59 15.07 3.58 3.58 Total: -1.00 -32.81 237.59 -3.64 -36.45 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -2.03 Total: -3.04 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.15 Total: 10.34 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.87 Total: -41.08 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.08 Total: -17.85 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.81 -3.64 -36.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306348848.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.715 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds