Wall clock time and date at job start Sun Mar 29 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 F 1.39903 * 110.28545 * 196.09366 * 3 2 1 5 5 C 1.54614 * 110.32732 * 318.22258 * 3 2 1 6 6 C 1.54949 * 102.99996 * 97.06180 * 5 3 2 7 7 N 1.48603 * 103.02700 * 37.35624 * 6 5 3 8 8 C 1.34779 * 126.97629 * 140.71311 * 7 6 5 9 9 O 1.21690 * 119.99440 * 180.02562 * 8 7 6 10 10 C 1.46372 * 120.00313 * 0.03992 * 8 7 6 11 11 H 1.08000 * 119.99682 * 353.99641 * 10 8 7 12 12 C 1.40043 * 119.99925 * 173.99141 * 10 8 7 13 13 N 1.30668 * 120.00060 * 6.19037 * 12 10 8 14 14 Si 1.86801 * 120.00001 * 186.18982 * 12 10 8 15 15 H 1.48497 * 109.47674 * 94.98260 * 14 12 10 16 16 H 1.48502 * 109.47320 * 214.98729 * 14 12 10 17 17 H 1.48508 * 109.47118 * 334.98318 * 14 12 10 18 18 C 1.47484 * 105.98393 * 320.74578 * 7 6 5 19 19 H 1.09001 * 110.73986 * 215.48456 * 5 3 2 20 20 H 1.08992 * 110.74578 * 338.63106 * 5 3 2 21 21 H 1.08993 * 110.66332 * 155.90757 * 6 5 3 22 22 H 1.08999 * 110.65449 * 279.02484 * 6 5 3 23 23 H 0.97003 * 119.99520 * 180.02562 * 13 12 10 24 24 H 1.08996 * 109.91276 * 266.08727 * 18 7 6 25 25 H 1.09005 * 110.06872 * 144.90237 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.0924 1.2617 0.3638 5 6 3.1455 -1.0803 0.9659 6 6 3.4412 -2.2741 0.0234 7 7 3.9626 -1.6129 -1.2011 8 6 4.9762 -2.0364 -1.9820 9 8 5.3001 -1.3910 -2.9615 10 6 5.6872 -3.2725 -1.6521 11 1 5.4658 -3.7938 -0.7325 12 6 6.6544 -3.7794 -2.5289 13 7 7.0091 -3.0890 -3.5801 14 14 7.4373 -5.4424 -2.1959 15 1 6.7107 -6.4924 -2.9539 16 1 8.8585 -5.4154 -2.6257 17 1 7.3652 -5.7414 -0.7430 18 6 3.1453 -0.3993 -1.3866 19 1 4.0578 -0.7406 1.4563 20 1 2.3897 -1.3491 1.7038 21 1 4.1932 -2.9315 0.4596 22 1 2.5273 -2.8259 -0.1965 23 1 7.6788 -3.4403 -4.1876 24 1 2.3146 -0.6105 -2.0600 25 1 3.7577 0.4053 -1.7938 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306348849.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:53 Heat of formation + Delta-G solvation = -47.025329 kcal Electronic energy + Delta-G solvation = -13709.451158 eV Core-core repulsion = 11023.972567 eV Total energy + Delta-G solvation = -2685.478591 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.93102 -38.58548 -36.66929 -35.39322 -32.62265 -30.51652 -28.94598 -26.41661 -23.51718 -22.17173 -19.50605 -18.51657 -17.05321 -15.89525 -15.46386 -15.15096 -14.43588 -14.25102 -14.04832 -13.84626 -13.38315 -12.83731 -12.67604 -12.18522 -11.97801 -11.67759 -11.49281 -11.26616 -11.07160 -11.00131 -10.80037 -10.40645 -10.25149 -8.95623 -7.81867 -7.54805 -6.33101 -4.77439 2.45726 2.47549 3.08066 3.15280 3.18561 3.32237 3.96826 4.30375 4.34004 4.36067 4.46136 4.81872 5.40053 5.43289 5.59466 5.72233 6.03533 6.12059 6.15217 6.28635 6.94114 7.23739 7.33506 7.91382 8.21920 8.89769 9.26534 10.41541 10.61018 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.055637 B = 0.008059 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.137066 B = 3473.480207 C = 3663.415056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.200 3.800 3 C 0.210 3.790 4 F -0.177 7.177 5 C -0.146 4.146 6 C 0.113 3.887 7 N -0.642 5.642 8 C 0.575 3.425 9 O -0.570 6.570 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.765 5.765 14 Si 0.911 3.089 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.263 1.263 18 C 0.102 3.898 19 H 0.105 0.895 20 H 0.089 0.911 21 H 0.096 0.904 22 H 0.059 0.941 23 H 0.271 0.729 24 H 0.066 0.934 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 0.739 8.304 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.120 4.120 3 C 0.187 3.813 4 F -0.157 7.157 5 C -0.186 4.186 6 C -0.012 4.012 7 N -0.383 5.383 8 C 0.382 3.618 9 O -0.451 6.451 10 C -0.574 4.574 11 H 0.091 0.909 12 C -0.134 4.134 13 N -0.393 5.393 14 Si 0.735 3.265 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.024 4.024 19 H 0.124 0.876 20 H 0.107 0.893 21 H 0.114 0.886 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.850 1.121 7.497 9.575 hybrid contribution 0.646 -0.600 0.258 0.919 sum -5.204 0.521 7.755 9.354 Atomic orbital electron populations 1.81158 1.12357 1.06229 1.07860 1.29149 0.94839 0.94393 0.93654 1.19021 0.80378 0.81751 1.00169 1.92973 1.87851 1.41907 1.92994 1.23436 1.02905 0.94871 0.97358 1.22307 0.99464 0.93914 0.85474 1.49297 1.36445 1.23235 1.29335 1.18136 0.76701 0.85895 0.81035 1.90640 1.67027 1.58548 1.28906 1.20825 1.21474 1.07625 1.07435 0.90865 1.25731 0.95330 0.98147 0.94146 1.70013 1.23860 1.35409 1.10013 0.86301 0.78543 0.82080 0.79549 1.19728 1.20363 1.18736 1.22065 0.96466 0.93091 0.90773 0.87650 0.89260 0.88561 0.92294 0.91842 0.91620 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.34 18.54 42.15 0.78 -5.56 15 2 C 0.20 2.89 14.05 -20.76 -0.29 2.60 15 3 C 0.21 3.00 1.60 -92.04 -0.15 2.85 15 4 F -0.18 -2.60 16.81 2.25 0.04 -2.57 15 5 C -0.15 -1.83 6.38 -24.85 -0.16 -1.98 15 6 C 0.11 1.77 6.94 -1.85 -0.01 1.75 15 7 N -0.64 -13.49 3.30 -171.02 -0.56 -14.05 15 8 C 0.57 15.54 7.82 -12.99 -0.10 15.44 15 9 O -0.57 -17.79 15.39 5.20 0.08 -17.71 15 10 C -0.54 -14.20 9.06 -35.63 -0.32 -14.52 15 11 H 0.07 1.73 6.42 -52.49 -0.34 1.40 15 12 C 0.09 2.30 5.49 -17.37 -0.10 2.21 15 13 N -0.76 -21.99 11.85 55.55 0.66 -21.33 15 14 Si 0.91 19.07 29.56 -169.99 -5.03 14.04 15 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 17 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 18 C 0.10 1.82 6.45 -2.98 -0.02 1.80 15 19 H 0.11 1.26 8.12 -51.93 -0.42 0.84 15 20 H 0.09 0.88 7.84 -51.93 -0.41 0.47 15 21 H 0.10 1.49 6.62 -51.93 -0.34 1.14 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.27 7.04 8.29 -40.82 -0.34 6.71 15 24 H 0.07 1.13 7.67 -51.93 -0.40 0.73 15 25 H 0.10 1.82 7.94 -51.93 -0.41 1.41 15 LS Contribution 235.62 15.07 3.55 3.55 Total: -1.00 -32.29 235.62 -3.51 -35.80 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -1.88 Total: -2.31 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -1.15 Total: 10.14 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.88 Total: -40.94 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.08 Total: -17.71 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.29 -3.51 -35.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306348849.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.230 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds