Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 N 1.30060 * 126.21637 * 90.02424 * 13 12 11 15 15 N 1.28657 * 109.54584 * 179.97438 * 14 13 12 16 16 C 1.31065 * 109.31903 * 359.97438 * 15 14 13 17 17 N 1.38249 * 126.37448 * 180.02562 * 16 15 14 18 18 O 1.34593 * 107.25705 * 359.77355 * 16 15 14 19 19 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 21 21 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 22 22 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 23 23 H 0.97006 * 120.00102 * 0.02562 * 17 16 15 24 24 H 0.97005 * 120.00433 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 7 2.6934 -6.6457 1.0534 15 7 3.4946 -7.5829 0.6860 16 6 3.5357 -7.6297 -0.6232 17 7 4.2833 -8.5046 -1.3892 18 8 2.7103 -6.6712 -1.0831 19 1 -0.4851 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0027 21 1 0.5889 -4.9739 0.8903 22 1 0.5910 -4.9743 -0.8897 23 1 4.8473 -9.1662 -0.9587 24 1 4.2440 -8.4571 -2.3573 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306385243.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = 8.393752 kcal Electronic energy + Delta-G solvation = -13315.630197 eV Core-core repulsion = 10652.474720 eV Total energy + Delta-G solvation = -2663.155478 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.89411 -37.42939 -35.93609 -35.41348 -33.58364 -32.37129 -29.91247 -27.12360 -25.32710 -23.09054 -22.21596 -19.86041 -18.20787 -17.60737 -17.18418 -17.09811 -15.86228 -15.36289 -14.69994 -14.09596 -13.61897 -13.15926 -12.30369 -12.27482 -11.70481 -11.64486 -11.58996 -11.18720 -10.99737 -10.74173 -10.51860 -10.26351 -8.89582 -8.50518 -7.71659 -7.70650 -6.24192 -4.69994 1.46776 1.86206 2.64124 3.13149 3.20249 3.24024 3.48315 4.08602 4.49600 4.56409 4.88749 5.08559 5.26896 5.62927 5.73495 6.12218 6.16689 6.63414 7.04012 7.39412 7.74375 7.90693 8.24723 8.61086 8.97200 9.37329 10.50915 10.69199 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.063962 B = 0.006215 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.653615 B = 4504.297629 C = 4706.312710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.763 5.763 12 C 0.233 3.767 13 C 0.147 3.853 14 N -0.252 5.252 15 N -0.349 5.349 16 C 0.413 3.587 17 N -0.797 5.797 18 O -0.243 6.243 19 H 0.270 0.730 20 H 0.384 0.616 21 H 0.100 0.900 22 H 0.081 0.919 23 H 0.433 0.567 24 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.727 -11.695 -4.219 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.422 5.422 12 C 0.107 3.893 13 C -0.068 4.068 14 N -0.098 5.098 15 N -0.206 5.206 16 C 0.109 3.891 17 N -0.361 5.361 18 O -0.123 6.123 19 H 0.081 0.919 20 H 0.216 0.784 21 H 0.118 0.882 22 H 0.099 0.901 23 H 0.268 0.732 24 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.783 -11.797 -2.931 13.920 hybrid contribution 1.028 0.633 -1.601 2.006 sum 7.812 -11.163 -4.532 14.359 Atomic orbital electron populations 1.70007 1.07069 1.27488 1.34860 1.25711 0.94667 1.00353 0.92551 0.86323 0.80163 0.81160 0.78839 1.19726 1.20360 1.18852 1.20834 0.93685 0.88975 1.54288 0.91239 1.18258 0.87219 0.81898 0.76398 1.90618 1.13905 1.86397 1.55035 1.46291 1.08939 1.03535 1.83425 1.19282 0.88442 0.77442 1.04101 1.27902 1.01089 0.99690 0.78151 1.74161 1.06661 1.03634 1.25314 1.74857 1.21337 1.19017 1.05415 1.23379 0.89662 0.87471 0.88554 1.40701 1.49884 1.36916 1.08578 1.84801 1.48758 1.40037 1.38675 0.91945 0.78395 0.88226 0.90090 0.73220 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.61 11.83 55.55 0.66 -21.96 14 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 14 3 Si 0.91 19.91 29.56 -169.99 -5.02 14.89 14 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 14 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 14 7 C -0.54 -15.12 9.54 -35.64 -0.34 -15.46 14 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 14 9 C 0.56 15.62 7.75 -12.99 -0.10 15.52 14 10 O -0.58 -18.23 15.02 5.20 0.08 -18.15 14 11 N -0.76 -17.14 5.54 -62.90 -0.35 -17.49 14 12 C 0.23 4.51 6.30 -5.20 -0.03 4.47 14 13 C 0.15 2.58 7.84 -13.03 -0.10 2.48 14 14 N -0.25 -4.67 12.20 32.59 0.40 -4.27 14 15 N -0.35 -5.81 12.26 29.86 0.37 -5.45 14 16 C 0.41 5.66 9.72 -86.90 -0.84 4.81 14 17 N -0.80 -6.14 9.06 29.86 0.27 -5.87 14 18 O -0.24 -3.81 10.90 3.68 0.04 -3.77 14 19 H 0.27 7.21 8.29 -40.82 -0.34 6.87 14 20 H 0.38 7.91 8.44 -40.82 -0.34 7.57 14 21 H 0.10 1.95 8.14 -51.93 -0.42 1.53 14 22 H 0.08 1.53 8.14 -51.93 -0.42 1.11 14 23 H 0.43 2.29 8.95 -40.82 -0.37 1.93 14 24 H 0.42 2.10 8.95 -40.82 -0.37 1.74 14 LS Contribution 233.12 15.07 3.51 3.51 Total: -1.00 -35.45 233.12 -3.03 -38.48 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -1.47 Total: 5.93 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -1.52 Total: 14.14 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 1.34 Total: -55.03 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.12 Total: -21.93 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -35.45 -3.03 -38.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306385243.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.875 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds