Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 N 1.30060 * 126.21637 * 90.02424 * 13 12 11 15 15 N 1.28657 * 109.54584 * 179.97438 * 14 13 12 16 16 C 1.31065 * 109.31903 * 359.97438 * 15 14 13 17 17 N 1.38249 * 126.37448 * 180.02562 * 16 15 14 18 18 O 1.34593 * 107.25705 * 359.77355 * 16 15 14 19 19 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 21 21 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 22 22 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 23 23 H 0.97006 * 120.00102 * 0.02562 * 17 16 15 24 24 H 0.97005 * 120.00433 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 7 2.6934 -6.6457 1.0534 15 7 3.4946 -7.5829 0.6860 16 6 3.5357 -7.6297 -0.6232 17 7 4.2833 -8.5046 -1.3892 18 8 2.7103 -6.6712 -1.0831 19 1 -0.4851 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0027 21 1 0.5889 -4.9739 0.8903 22 1 0.5910 -4.9743 -0.8897 23 1 4.8473 -9.1662 -0.9587 24 1 4.2440 -8.4571 -2.3573 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306385243.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = -26.217678 kcal Electronic energy + Delta-G solvation = -13317.131061 eV Core-core repulsion = 10652.474720 eV Total energy + Delta-G solvation = -2664.656342 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.14428 -39.46964 -37.20178 -36.48926 -35.34724 -34.46903 -31.41199 -28.92034 -27.08545 -24.27611 -23.60303 -21.86043 -19.64479 -19.08873 -18.48459 -18.04578 -17.56097 -17.05586 -16.30605 -15.97136 -15.39659 -14.78535 -14.18343 -13.58727 -13.54672 -13.16266 -12.90507 -12.72376 -12.69970 -12.61640 -12.04866 -12.00167 -10.92560 -10.02321 -9.66476 -9.49447 -8.30191 -6.87272 0.20413 0.73968 1.37609 1.43543 1.44345 1.60046 2.25442 2.37574 2.44986 3.08019 3.28213 3.58975 3.88723 4.21915 4.26056 4.55987 4.64779 5.32523 5.79292 5.81492 5.97324 6.20112 6.40260 6.85907 7.38663 7.39876 8.41436 8.64329 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.063962 B = 0.006215 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.653615 B = 4504.297629 C = 4706.312710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.031 3.969 3 Si 0.999 3.001 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.544 3.456 10 O -0.623 6.623 11 N -0.752 5.752 12 C 0.241 3.759 13 C 0.137 3.863 14 N -0.266 5.266 15 N -0.380 5.380 16 C 0.428 3.572 17 N -0.760 5.760 18 O -0.245 6.245 19 H 0.277 0.723 20 H 0.394 0.606 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.447 0.553 24 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.772 -11.899 -4.988 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.606 4.606 8 H 0.105 0.895 9 C 0.349 3.651 10 O -0.510 6.510 11 N -0.409 5.409 12 C 0.115 3.885 13 C -0.079 4.079 14 N -0.112 5.112 15 N -0.238 5.238 16 C 0.124 3.876 17 N -0.327 5.327 18 O -0.125 6.125 19 H 0.087 0.913 20 H 0.228 0.772 21 H 0.111 0.889 22 H 0.102 0.898 23 H 0.286 0.714 24 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 8.900 -12.089 -3.733 15.469 hybrid contribution 0.476 0.491 -1.430 1.585 sum 9.376 -11.598 -5.163 15.782 Atomic orbital electron populations 1.70157 1.09419 1.29185 1.35883 1.26947 0.95566 1.04839 0.91166 0.84996 0.78688 0.75031 0.79442 1.18508 1.19680 1.17492 1.21375 0.94776 0.89752 1.54713 0.89472 1.18552 0.86853 0.83562 0.76108 1.90575 1.15761 1.87500 1.57153 1.45899 1.09379 1.03653 1.82015 1.19101 0.88641 0.76786 1.03969 1.27183 1.01977 1.00081 0.78653 1.74088 1.06879 1.04092 1.26131 1.74783 1.22480 1.19623 1.06902 1.23753 0.88538 0.86825 0.88455 1.40885 1.47623 1.34930 1.09291 1.84778 1.49260 1.40562 1.37869 0.91334 0.77226 0.88891 0.89811 0.71414 0.73089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.13 11.83 21.83 0.26 -48.87 14 2 C 0.03 1.68 5.50 85.30 0.47 2.15 14 3 Si 1.00 40.34 29.56 68.60 2.03 42.37 14 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 14 5 H -0.27 -10.59 7.11 99.48 0.71 -9.89 14 6 H -0.25 -9.54 7.11 99.48 0.71 -8.83 14 7 C -0.57 -31.94 9.54 24.83 0.24 -31.70 14 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 14 9 C 0.54 31.12 7.75 86.36 0.67 31.79 14 10 O -0.62 -40.68 15.02 -4.30 -0.06 -40.75 14 11 N -0.75 -34.12 5.54 -471.14 -2.61 -36.74 14 12 C 0.24 9.43 6.30 85.63 0.54 9.97 14 13 C 0.14 4.77 7.84 88.37 0.69 5.47 14 14 N -0.27 -9.73 12.20 -165.27 -2.02 -11.74 14 15 N -0.38 -12.14 12.26 -173.50 -2.13 -14.27 14 16 C 0.43 10.77 9.72 179.05 1.74 12.51 14 17 N -0.76 -9.07 9.06 -169.65 -1.54 -10.60 14 18 O -0.25 -7.31 10.90 -9.76 -0.11 -7.42 14 19 H 0.28 15.01 8.29 -92.71 -0.77 14.24 14 20 H 0.39 16.16 8.44 -92.71 -0.78 15.38 14 21 H 0.09 3.77 8.14 -2.38 -0.02 3.75 14 22 H 0.08 3.22 8.14 -2.38 -0.02 3.20 14 23 H 0.45 3.08 8.95 -92.70 -0.83 2.25 14 24 H 0.43 2.68 8.95 -92.70 -0.83 1.85 14 Total: -1.00 -77.78 233.12 -2.98 -80.77 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -1.15 Total: 17.07 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 4.35 Total: 30.18 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -8.04 Total: -122.22 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.17 Total: -48.17 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -77.78 -2.98 -80.77 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306385243.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.550 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds