Wall clock time and date at job start Sun Mar 29 2020 21:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47478 * 2 1 4 4 C 1.53008 * 109.46833 * 119.99774 * 2 1 3 5 5 C 1.50698 * 109.47127 * 183.34316 * 4 2 1 6 6 H 1.08007 * 119.99675 * 355.06251 * 5 4 2 7 7 C 1.37874 * 120.00204 * 175.06769 * 5 4 2 8 8 N 1.31512 * 119.99806 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47108 * 89.99429 * 9 7 5 11 11 H 1.48495 * 109.46892 * 209.99520 * 9 7 5 12 12 H 1.48502 * 109.46888 * 329.99724 * 9 7 5 13 13 N 1.46896 * 109.47143 * 239.99374 * 2 1 3 14 14 C 1.47999 * 111.00131 * 76.42185 * 13 2 1 15 15 C 1.50447 * 112.83282 * 191.34274 * 14 13 2 16 16 C 1.54316 * 108.49192 * 93.72939 * 15 14 13 17 17 C 1.45877 * 112.18543 * 281.46294 * 16 15 14 18 18 C 1.54316 * 112.18467 * 61.12477 * 17 16 15 19 19 C 1.47999 * 111.00154 * 307.69928 * 13 2 1 20 20 H 1.08996 * 109.47599 * 184.98940 * 1 2 3 21 21 H 1.08996 * 109.46983 * 304.99235 * 1 2 3 22 22 H 1.08999 * 109.46741 * 64.99117 * 1 2 3 23 23 H 1.09001 * 109.46538 * 303.33903 * 4 2 1 24 24 H 1.08995 * 109.46968 * 63.33797 * 4 2 1 25 25 H 0.96996 * 120.00113 * 180.02562 * 8 7 5 26 26 H 1.08999 * 108.80765 * 312.21021 * 14 13 2 27 27 H 1.08997 * 108.81142 * 70.48007 * 14 13 2 28 28 H 1.08997 * 109.62955 * 334.03306 * 15 14 13 29 29 H 1.08993 * 109.63741 * 213.43073 * 15 14 13 30 30 H 1.09003 * 108.93446 * 160.77430 * 16 15 14 31 31 H 1.08992 * 108.93830 * 42.16311 * 16 15 14 32 32 H 1.09000 * 108.93891 * 181.82032 * 17 16 15 33 33 H 1.09004 * 108.93871 * 300.43097 * 17 16 15 34 34 H 1.08995 * 109.63441 * 41.16358 * 18 17 16 35 35 H 1.09000 * 109.63024 * 161.76401 * 18 17 16 36 36 H 1.08997 * 108.81642 * 323.97659 * 19 13 2 37 37 H 1.08997 * 108.81767 * 205.69921 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5446 -0.6499 1.2915 6 1 4.0878 -0.2117 0.4672 7 6 4.2279 -1.1442 2.3823 8 7 3.5665 -1.6775 3.3861 9 14 6.0932 -1.0564 2.4342 10 1 6.5112 0.2216 3.0642 11 1 6.6203 -2.1953 3.2281 12 1 6.6306 -1.1258 1.0516 13 7 2.0197 -0.6926 -1.1993 14 6 1.8906 0.1663 -2.3977 15 6 2.1207 -0.5840 -3.6812 16 6 0.7560 -1.0623 -4.2200 17 6 0.2723 -2.2474 -3.5203 18 6 0.0606 -1.9888 -2.0138 19 6 1.3999 -2.0302 -1.3296 20 1 -0.3634 -1.0237 0.0894 21 1 -0.3633 0.5893 0.8419 22 1 -0.3633 0.4345 -0.9313 23 1 1.6285 -0.2430 2.1382 24 1 1.7263 -1.7647 1.2199 25 1 4.0472 -2.0249 4.1537 26 1 0.8889 0.5955 -2.4161 27 1 2.6166 0.9764 -2.3292 28 1 2.7619 -1.4450 -3.4922 29 1 2.5922 0.0743 -4.4108 30 1 0.8559 -1.2937 -5.2805 31 1 0.0281 -0.2598 -4.1017 32 1 -0.6746 -2.5574 -3.9625 33 1 0.9981 -3.0514 -3.6427 34 1 -0.3935 -1.0083 -1.8707 35 1 -0.5874 -2.7600 -1.5974 36 1 1.2732 -2.4574 -0.3348 37 1 2.0678 -2.6729 -1.9031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306393246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:45 Heat of formation + Delta-G solvation = -7.985764 kcal Electronic energy + Delta-G solvation = -15082.383742 eV Core-core repulsion = 12859.150439 eV Total energy + Delta-G solvation = -2223.233303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31515 -35.31954 -32.54112 -31.86574 -30.15422 -27.38114 -25.91247 -24.51324 -22.82335 -20.34566 -20.02642 -18.49146 -16.14336 -15.97086 -15.30287 -14.57975 -14.27437 -13.54381 -13.29354 -13.14534 -12.68901 -12.34499 -11.99106 -11.73627 -11.59916 -11.38059 -11.20236 -10.89155 -10.56163 -10.53476 -10.35718 -10.28307 -10.20591 -9.79027 -9.68624 -9.11006 -8.89291 -8.20410 -7.24388 -5.83812 -3.80940 3.42137 3.48103 3.53696 4.56596 4.61606 4.89178 4.97455 5.20694 5.44138 5.52277 5.57521 5.69322 5.75776 5.85075 5.87477 6.01907 6.05425 6.14997 6.18585 6.24162 6.30391 6.34498 6.43530 6.47799 6.59530 6.64538 6.74833 6.83575 7.09484 7.64103 7.77997 8.06185 8.14422 8.19503 8.66102 9.25907 9.80494 11.28324 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040450 B = 0.008646 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.053491 B = 3237.760515 C = 3485.682017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.065 0.935 4 C 0.031 3.969 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.048 3.952 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.522 5.522 14 C 0.061 3.939 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.160 4.160 19 C 0.062 3.938 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.020 0.980 24 H 0.016 0.984 25 H 0.256 0.744 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 1.041 -12.480 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.019 4.019 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.246 5.246 14 C -0.067 4.067 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.198 4.198 19 C -0.066 4.066 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.974 0.883 -12.272 13.678 hybrid contribution 0.131 0.119 0.015 0.178 sum -5.842 1.002 -12.258 13.616 Atomic orbital electron populations 1.22725 1.00006 1.01478 0.99916 1.21869 0.89886 0.98121 0.91991 0.91638 1.19209 0.96356 0.95080 0.89983 1.21207 0.91701 1.37236 1.02459 0.92041 1.25020 0.97963 0.96084 0.95977 1.69965 1.35082 1.41722 1.07908 0.86639 0.86544 0.77213 0.77848 1.21063 1.21622 1.19920 1.61889 1.58699 1.02346 1.01655 1.21741 0.99030 0.95826 0.90057 1.21417 0.96862 1.01034 0.96422 1.20576 0.97368 0.98339 0.99131 1.20563 1.00407 0.98308 0.96160 1.22359 0.99855 1.02567 0.95062 1.21798 0.92028 0.91602 1.01173 0.92509 0.93077 0.94054 0.96151 0.96625 0.93400 0.95795 0.91878 0.90629 0.91896 0.92835 0.92738 0.93152 0.92263 0.90652 0.92179 0.90342 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 7.49 37.16 0.28 -2.91 16 2 C 0.09 1.85 2.23 -67.71 -0.15 1.70 16 3 H 0.07 1.40 7.99 -51.93 -0.42 0.98 16 4 C 0.03 0.79 4.40 -27.88 -0.12 0.67 16 5 C -0.49 -13.88 8.81 -34.44 -0.30 -14.18 16 6 H 0.06 1.75 7.70 -52.48 -0.40 1.35 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.65 13.29 55.43 0.74 -26.92 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.52 -10.06 4.27 -227.92 -0.97 -11.03 16 14 C 0.06 0.98 4.85 -4.49 -0.02 0.96 16 15 C -0.12 -1.62 5.63 -27.32 -0.15 -1.78 16 16 C -0.12 -1.40 5.30 -29.41 -0.16 -1.56 16 17 C -0.12 -1.46 5.30 -29.41 -0.16 -1.61 16 18 C -0.16 -2.31 4.32 -27.31 -0.12 -2.42 16 19 C 0.06 1.09 4.53 -4.49 -0.02 1.07 16 20 H 0.06 0.98 6.07 -51.93 -0.32 0.67 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.65 5.46 -51.93 -0.28 0.36 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.42 6.21 -51.93 -0.32 0.10 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.37 5.16 -51.93 -0.27 0.10 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.12 7.08 -51.93 -0.37 0.76 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.65 7.52 -51.93 -0.39 0.26 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 34 H 0.08 1.12 4.02 -51.93 -0.21 0.91 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.58 5.63 -51.93 -0.29 1.29 16 37 H 0.06 1.07 6.59 -51.93 -0.34 0.73 16 LS Contribution 268.97 15.07 4.05 4.05 Total: -1.00 -29.72 268.97 -8.32 -38.04 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.09 Total: -2.74 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -1.02 Total: -18.75 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.24 Total: -37.95 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.72 -8.32 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306393246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.054 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds