Wall clock time and date at job start Sun Mar 29 2020 21:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47478 * 2 1 4 4 C 1.53008 * 109.46833 * 119.99774 * 2 1 3 5 5 C 1.50698 * 109.47127 * 183.34316 * 4 2 1 6 6 H 1.08007 * 119.99675 * 355.06251 * 5 4 2 7 7 C 1.37874 * 120.00204 * 175.06769 * 5 4 2 8 8 N 1.31512 * 119.99806 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47108 * 89.99429 * 9 7 5 11 11 H 1.48495 * 109.46892 * 209.99520 * 9 7 5 12 12 H 1.48502 * 109.46888 * 329.99724 * 9 7 5 13 13 N 1.46896 * 109.47143 * 239.99374 * 2 1 3 14 14 C 1.47999 * 111.00131 * 76.42185 * 13 2 1 15 15 C 1.50447 * 112.83282 * 191.34274 * 14 13 2 16 16 C 1.54316 * 108.49192 * 93.72939 * 15 14 13 17 17 C 1.45877 * 112.18543 * 281.46294 * 16 15 14 18 18 C 1.54316 * 112.18467 * 61.12477 * 17 16 15 19 19 C 1.47999 * 111.00154 * 307.69928 * 13 2 1 20 20 H 1.08996 * 109.47599 * 184.98940 * 1 2 3 21 21 H 1.08996 * 109.46983 * 304.99235 * 1 2 3 22 22 H 1.08999 * 109.46741 * 64.99117 * 1 2 3 23 23 H 1.09001 * 109.46538 * 303.33903 * 4 2 1 24 24 H 1.08995 * 109.46968 * 63.33797 * 4 2 1 25 25 H 0.96996 * 120.00113 * 180.02562 * 8 7 5 26 26 H 1.08999 * 108.80765 * 312.21021 * 14 13 2 27 27 H 1.08997 * 108.81142 * 70.48007 * 14 13 2 28 28 H 1.08997 * 109.62955 * 334.03306 * 15 14 13 29 29 H 1.08993 * 109.63741 * 213.43073 * 15 14 13 30 30 H 1.09003 * 108.93446 * 160.77430 * 16 15 14 31 31 H 1.08992 * 108.93830 * 42.16311 * 16 15 14 32 32 H 1.09000 * 108.93891 * 181.82032 * 17 16 15 33 33 H 1.09004 * 108.93871 * 300.43097 * 17 16 15 34 34 H 1.08995 * 109.63441 * 41.16358 * 18 17 16 35 35 H 1.09000 * 109.63024 * 161.76401 * 18 17 16 36 36 H 1.08997 * 108.81642 * 323.97659 * 19 13 2 37 37 H 1.08997 * 108.81767 * 205.69921 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5446 -0.6499 1.2915 6 1 4.0878 -0.2117 0.4672 7 6 4.2279 -1.1442 2.3823 8 7 3.5665 -1.6775 3.3861 9 14 6.0932 -1.0564 2.4342 10 1 6.5112 0.2216 3.0642 11 1 6.6203 -2.1953 3.2281 12 1 6.6306 -1.1258 1.0516 13 7 2.0197 -0.6926 -1.1993 14 6 1.8906 0.1663 -2.3977 15 6 2.1207 -0.5840 -3.6812 16 6 0.7560 -1.0623 -4.2200 17 6 0.2723 -2.2474 -3.5203 18 6 0.0606 -1.9888 -2.0138 19 6 1.3999 -2.0302 -1.3296 20 1 -0.3634 -1.0237 0.0894 21 1 -0.3633 0.5893 0.8419 22 1 -0.3633 0.4345 -0.9313 23 1 1.6285 -0.2430 2.1382 24 1 1.7263 -1.7647 1.2199 25 1 4.0472 -2.0249 4.1537 26 1 0.8889 0.5955 -2.4161 27 1 2.6166 0.9764 -2.3292 28 1 2.7619 -1.4450 -3.4922 29 1 2.5922 0.0743 -4.4108 30 1 0.8559 -1.2937 -5.2805 31 1 0.0281 -0.2598 -4.1017 32 1 -0.6746 -2.5574 -3.9625 33 1 0.9981 -3.0514 -3.6427 34 1 -0.3935 -1.0083 -1.8707 35 1 -0.5874 -2.7600 -1.5974 36 1 1.2732 -2.4574 -0.3348 37 1 2.0678 -2.6729 -1.9031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306393246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:45 Heat of formation + Delta-G solvation = -26.075774 kcal Electronic energy + Delta-G solvation = -15083.168184 eV Core-core repulsion = 12859.150439 eV Total energy + Delta-G solvation = -2224.017745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64641 -36.75284 -34.61502 -33.07651 -31.74208 -29.26091 -27.24048 -25.86548 -24.75173 -21.66689 -21.23946 -20.01143 -18.33745 -17.36956 -16.64648 -16.40016 -15.68197 -14.85439 -14.63890 -14.59519 -14.04792 -13.86916 -13.71443 -13.21616 -13.14023 -13.01837 -12.63956 -12.61477 -12.38385 -12.12964 -11.97986 -11.46943 -11.36268 -11.29498 -11.00331 -10.97162 -10.94188 -10.45553 -8.70512 -8.08958 -6.13607 1.41479 1.42636 1.54369 2.48101 3.13274 3.27783 3.82299 3.93150 4.07645 4.27699 4.32342 4.39360 4.47951 4.54374 4.60384 4.64950 4.84248 4.87810 4.95967 5.07393 5.12938 5.17714 5.21810 5.25518 5.31326 5.34344 5.42178 5.51345 5.52097 5.58165 5.73874 5.92278 6.37659 6.59631 6.65014 7.00938 7.52099 9.03115 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040450 B = 0.008646 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.053491 B = 3237.760515 C = 3485.682017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 H 0.058 0.942 4 C 0.037 3.963 5 C -0.499 4.499 6 H 0.058 0.942 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.547 5.547 14 C 0.062 3.938 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.153 4.153 19 C 0.068 3.932 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.067 0.933 23 H -0.009 1.009 24 H -0.006 1.006 25 H 0.258 0.742 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 1.473 -14.587 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 H 0.076 0.924 4 C 0.000 4.000 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.271 5.271 14 C -0.065 4.065 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.192 4.192 19 C -0.059 4.059 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.010 0.990 24 H 0.012 0.988 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.132 1.321 -14.398 15.705 hybrid contribution 0.183 -0.026 0.679 0.704 sum -5.949 1.295 -13.719 15.009 Atomic orbital electron populations 1.22579 0.97332 1.01704 1.01321 1.21533 0.91994 0.96774 0.90732 0.92404 1.19065 0.95227 0.94112 0.91591 1.21517 0.93180 1.36769 1.02253 0.92422 1.25885 1.02998 0.95785 0.95671 1.70096 1.37027 1.42707 1.08561 0.85556 0.80545 0.77496 0.78069 1.20089 1.21204 1.19245 1.61733 1.59759 1.03220 1.02416 1.21811 0.99462 0.95446 0.89731 1.21414 0.97980 1.00509 0.95547 1.20554 0.96182 0.98152 1.00172 1.20539 1.01506 0.98626 0.94407 1.22253 0.97589 1.02794 0.96525 1.21696 0.93995 0.90674 0.99542 0.92649 0.92984 0.91475 0.99038 0.98785 0.93300 0.94643 0.92601 0.92245 0.89918 0.90652 0.92094 0.91064 0.92527 0.90659 0.91576 0.93798 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.84 7.49 71.98 0.54 -5.30 16 2 C 0.10 4.12 2.23 44.92 0.10 4.22 16 3 H 0.06 2.48 7.99 -2.39 -0.02 2.47 16 4 C 0.04 1.99 4.40 29.85 0.13 2.12 16 5 C -0.50 -29.08 8.81 25.60 0.23 -28.85 16 6 H 0.06 3.34 7.70 -2.91 -0.02 3.31 16 7 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 8 N -0.94 -58.90 13.29 21.45 0.28 -58.61 16 9 Si 0.96 46.37 29.54 68.60 2.03 48.39 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.55 -20.97 4.27 -875.00 -3.74 -24.71 16 14 C 0.06 1.89 4.85 85.27 0.41 2.31 16 15 C -0.12 -2.88 5.63 30.21 0.17 -2.71 16 16 C -0.11 -2.30 5.30 28.86 0.15 -2.15 16 17 C -0.11 -2.48 5.30 28.86 0.15 -2.33 16 18 C -0.15 -4.15 4.32 30.22 0.13 -4.02 16 19 C 0.07 2.43 4.53 85.27 0.39 2.82 16 20 H 0.05 1.90 6.07 -2.39 -0.01 1.89 16 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.07 1.95 5.46 -2.39 -0.01 1.94 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.01 -0.35 6.21 -2.39 -0.01 -0.36 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.04 1.00 5.16 -2.39 -0.01 0.98 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.67 7.08 -2.39 -0.02 1.65 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.20 7.52 -2.39 -0.02 1.18 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.28 7.52 -2.39 -0.02 1.26 16 34 H 0.08 2.05 4.02 -2.39 -0.01 2.04 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.83 5.63 -2.39 -0.01 1.82 16 37 H 0.06 2.07 6.59 -2.39 -0.02 2.05 16 Total: -1.00 -64.62 268.97 2.46 -62.16 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.03 Total: 6.67 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 2.86 Total: -33.89 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.46 Total: -83.33 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -64.62 2.46 -62.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306393246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.080 kcal (2) G-P(sol) polarization free energy of solvation -64.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds