Wall clock time and date at job start Sun Mar 29 2020 21:39:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08991 * 109.63025 * 2 1
4 4 C 1.54311 * 109.63013 * 239.60162 * 2 1 3
5 5 C 1.45884 * 112.18258 * 161.56209 * 4 2 1
6 6 H 1.08995 * 108.94287 * 300.42603 * 5 4 2
7 7 C 1.53006 * 108.86365 * 181.77096 * 5 4 2
8 8 C 1.54312 * 112.18454 * 61.12842 * 5 4 2
9 9 C 1.50446 * 108.48628 * 281.46062 * 8 5 4
10 10 N 1.47995 * 112.83330 * 93.73525 * 9 8 5
11 11 C 1.46898 * 111.00196 * 84.82936 * 10 9 8
12 12 C 1.50700 * 109.47070 * 66.05007 * 11 10 9
13 13 H 1.07999 * 119.99676 * 359.97438 * 12 11 10
14 14 C 1.37875 * 120.00091 * 179.97438 * 12 11 10
15 15 N 1.31514 * 120.00203 * 0.02562 * 14 12 11
16 16 Si 1.86801 * 119.99787 * 179.97438 * 14 12 11
17 17 H 1.48495 * 109.47385 * 0.02562 * 16 14 12
18 18 H 1.48507 * 109.46827 * 120.00462 * 16 14 12
19 19 H 1.48502 * 109.47087 * 240.00355 * 16 14 12
20 20 C 1.48006 * 114.62670 * 318.08872 * 10 9 8
21 21 H 1.08999 * 109.47470 * 180.39515 * 1 2 3
22 22 H 1.08996 * 109.47315 * 300.39825 * 1 2 3
23 23 H 1.09006 * 109.47154 * 60.39515 * 1 2 3
24 24 H 1.09004 * 108.93637 * 40.86837 * 4 2 1
25 25 H 1.08995 * 108.86774 * 282.21176 * 4 2 1
26 26 H 1.08998 * 109.46986 * 297.37450 * 7 5 4
27 27 H 1.09000 * 109.47101 * 57.37350 * 7 5 4
28 28 H 1.09003 * 109.47002 * 177.37772 * 7 5 4
29 29 H 1.09002 * 109.63502 * 161.76373 * 8 5 4
30 30 H 1.08999 * 109.80338 * 41.25718 * 8 5 4
31 31 H 1.09005 * 108.81019 * 214.59831 * 9 8 5
32 32 H 1.09007 * 108.81239 * 332.86746 * 9 8 5
33 33 H 1.09006 * 109.47190 * 186.05152 * 11 10 9
34 34 H 1.08999 * 109.47176 * 306.04948 * 11 10 9
35 35 H 0.96995 * 120.00629 * 179.97438 * 15 14 12
36 36 H 1.09001 * 108.81119 * 197.22811 * 20 10 9
37 37 H 1.08992 * 108.81864 * 78.95160 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8962 1.0266 0.0000
4 6 2.0484 -0.7354 -1.2536
5 6 3.4405 -0.4116 -1.5459
6 1 3.5271 0.6625 -1.7096
7 6 3.8612 -1.1434 -2.8221
8 6 4.3874 -0.8213 -0.3984
9 6 4.2899 0.2107 0.6919
10 7 3.3039 -0.1480 1.7357
11 6 3.9044 -1.0280 2.7470
12 6 4.9675 -0.2729 3.5025
13 1 5.1764 0.7576 3.2557
14 6 5.6733 -0.8975 4.5088
15 7 5.4193 -2.1525 4.8090
16 14 6.9915 0.0383 5.4447
17 1 7.0832 1.4238 4.9183
18 1 6.6397 0.0794 6.8869
19 1 8.2992 -0.6442 5.2734
20 6 2.0395 -0.7185 1.2196
21 1 -0.3634 -1.0276 0.0071
22 1 -0.3634 0.5200 0.8863
23 1 -0.3634 0.5077 -0.8936
24 1 1.4329 -0.4547 -2.1083
25 1 1.9614 -1.8100 -1.0931
26 1 3.8000 -2.2197 -2.6607
27 1 3.1974 -0.8602 -3.6390
28 1 4.8860 -0.8718 -3.0757
29 1 5.4118 -0.8681 -0.7679
30 1 4.0941 -1.7957 -0.0077
31 1 5.2691 0.3238 1.1574
32 1 4.0017 1.1641 0.2489
33 1 3.1336 -1.3626 3.4413
34 1 4.3519 -1.8926 2.2568
35 1 5.9161 -2.5921 5.5166
36 1 1.2831 -0.6620 2.0025
37 1 2.2036 -1.7661 0.9675
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306419311.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:14
Heat of formation + Delta-G solvation = -21.090458 kcal
Electronic energy + Delta-G solvation = -14848.636840 eV
Core-core repulsion = 12624.835274 eV
Total energy + Delta-G solvation = -2223.801566 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.18765 -34.84980 -33.62606 -32.28857 -28.75911 -27.06847 -26.50506 -24.36830
-23.01571 -20.91051 -19.81087 -18.74580 -16.27626 -15.39753 -14.88852 -14.50768
-14.31846 -14.11812 -13.08075 -12.92018 -12.44871 -12.33537 -12.19139 -11.98775
-11.68776 -11.39208 -11.23082 -11.03431 -10.83594 -10.64535 -10.43750 -10.28540
-10.13508 -10.02952 -9.63475 -9.58735 -9.09640 -8.39369 -6.99014 -5.97818
-3.98675 3.33362 3.40653 3.45878 4.45819 4.80849 4.93560 5.07327
5.19782 5.36425 5.37799 5.50109 5.62034 5.76640 5.85045 5.94411
5.95622 6.01469 6.11926 6.14999 6.16839 6.20641 6.38537 6.44730
6.53761 6.56265 6.67035 6.73070 6.80852 6.99677 7.39416 7.46959
7.88843 8.21112 8.34181 8.66122 9.10164 9.65284 11.12825
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.039686 B = 0.008050 C = 0.007286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 705.369885 B = 3477.461652 C = 3842.143956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.093 4.093
3 H 0.078 0.922
4 C -0.106 4.106
5 C -0.090 4.090
6 H 0.065 0.935
7 C -0.147 4.147
8 C -0.139 4.139
9 C 0.065 3.935
10 N -0.548 5.548
11 C 0.196 3.804
12 C -0.503 4.503
13 H 0.063 0.937
14 C 0.053 3.947
15 N -0.900 5.900
16 Si 0.896 3.104
17 H -0.272 1.272
18 H -0.284 1.284
19 H -0.285 1.285
20 C 0.068 3.932
21 H 0.050 0.950
22 H 0.056 0.944
23 H 0.049 0.951
24 H 0.054 0.946
25 H 0.056 0.944
26 H 0.051 0.949
27 H 0.048 0.952
28 H 0.052 0.948
29 H 0.060 0.940
30 H 0.062 0.938
31 H 0.080 0.920
32 H 0.051 0.949
33 H 0.026 0.974
34 H -0.010 1.010
35 H 0.260 0.740
36 H 0.061 0.939
37 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.708 2.619 -12.129 13.658
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.112 4.112
3 H 0.096 0.904
4 C -0.144 4.144
5 C -0.109 4.109
6 H 0.083 0.917
7 C -0.204 4.204
8 C -0.178 4.178
9 C -0.063 4.063
10 N -0.273 5.273
11 C 0.071 3.929
12 C -0.542 4.542
13 H 0.082 0.918
14 C -0.147 4.147
15 N -0.540 5.540
16 Si 0.724 3.276
17 H -0.197 1.197
18 H -0.211 1.211
19 H -0.212 1.212
20 C -0.060 4.060
21 H 0.069 0.931
22 H 0.075 0.925
23 H 0.068 0.932
24 H 0.072 0.928
25 H 0.074 0.926
26 H 0.070 0.930
27 H 0.067 0.933
28 H 0.071 0.929
29 H 0.078 0.922
30 H 0.081 0.919
31 H 0.098 0.902
32 H 0.069 0.931
33 H 0.044 0.956
34 H 0.008 0.992
35 H 0.069 0.931
36 H 0.079 0.921
37 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -5.777 2.888 -11.787 13.440
hybrid contribution 0.956 -0.491 0.211 1.096
sum -4.821 2.397 -11.575 12.766
Atomic orbital electron populations
1.21799 0.95334 1.01352 1.01270 1.20972 0.94925 1.00673 0.94598
0.90354 1.20679 0.95878 1.00340 0.97488 1.20167 0.95494 1.00070
0.95127 0.91681 1.21924 1.00832 1.00482 0.97159 1.21965 0.98565
1.00958 0.96308 1.21741 0.97413 0.96076 0.91062 1.61959 1.03890
1.47761 1.13671 1.19658 0.94030 0.90397 0.88838 1.21242 1.17792
0.98413 1.16715 0.91836 1.24996 0.97559 0.94934 0.97250 1.69972
1.41802 1.10941 1.31260 0.86472 0.81394 0.80040 0.79707 1.19661
1.21062 1.21178 1.21734 0.93133 0.95677 0.95413 0.93052 0.92524
0.93171 0.92773 0.92569 0.93015 0.93322 0.92912 0.92170 0.91946
0.90205 0.93103 0.95625 0.99230 0.93081 0.92084 0.96144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.74 8.89 37.16 0.33 -1.41 16
2 C -0.09 -1.39 2.41 -91.21 -0.22 -1.61 16
3 H 0.08 1.24 7.08 -51.93 -0.37 0.87 16
4 C -0.11 -1.45 3.89 -29.41 -0.11 -1.57 16
5 C -0.09 -1.26 2.25 -93.30 -0.21 -1.47 16
6 H 0.06 0.89 7.52 -51.93 -0.39 0.50 16
7 C -0.15 -1.75 8.99 37.16 0.33 -1.42 16
8 C -0.14 -2.37 4.90 -27.32 -0.13 -2.51 16
9 C 0.07 1.29 4.95 -4.50 -0.02 1.26 16
10 N -0.55 -12.13 4.67 -237.34 -1.11 -13.24 16
11 C 0.20 5.22 4.64 -4.98 -0.02 5.20 16
12 C -0.50 -14.35 8.18 -34.44 -0.28 -14.64 16
13 H 0.06 1.80 7.38 -52.49 -0.39 1.41 16
14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16
15 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16
16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16
17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
20 C 0.07 1.28 4.50 -4.49 -0.02 1.26 16
21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
22 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16
23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
24 H 0.05 0.65 7.96 -51.93 -0.41 0.23 16
25 H 0.06 0.80 7.51 -51.93 -0.39 0.41 16
26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
27 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16
28 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16
29 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16
30 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16
31 H 0.08 1.76 6.55 -51.93 -0.34 1.42 16
32 H 0.05 0.92 6.59 -51.93 -0.34 0.58 16
33 H 0.03 0.73 8.02 -51.93 -0.42 0.32 16
34 H -0.01 -0.29 7.65 -51.93 -0.40 -0.68 16
35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
36 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16
37 H 0.02 0.40 6.49 -51.93 -0.34 0.06 16
LS Contribution 280.02 15.07 4.22 4.22
Total: -1.00 -29.48 280.02 -8.24 -37.72
By element:
Atomic # 1 Polarization: 2.88 SS G_CDS: -6.61 Total: -3.73 kcal
Atomic # 6 Polarization: -15.00 SS G_CDS: -0.46 Total: -15.46 kcal
Atomic # 7 Polarization: -39.27 SS G_CDS: -0.37 Total: -39.64 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -29.48 -8.24 -37.72 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306419311.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.629 kcal
(2) G-P(sol) polarization free energy of solvation -29.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds