Wall clock time and date at job start Sun Mar 29 2020 21:39:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08991 * 109.63025 * 2 1
4 4 C 1.54311 * 109.63013 * 239.60162 * 2 1 3
5 5 C 1.45884 * 112.18258 * 161.56209 * 4 2 1
6 6 H 1.08995 * 108.94287 * 300.42603 * 5 4 2
7 7 C 1.53006 * 108.86365 * 181.77096 * 5 4 2
8 8 C 1.54312 * 112.18454 * 61.12842 * 5 4 2
9 9 C 1.50446 * 108.48628 * 281.46062 * 8 5 4
10 10 N 1.47995 * 112.83330 * 93.73525 * 9 8 5
11 11 C 1.46898 * 111.00196 * 84.82936 * 10 9 8
12 12 C 1.50700 * 109.47070 * 66.05007 * 11 10 9
13 13 H 1.07999 * 119.99676 * 359.97438 * 12 11 10
14 14 C 1.37875 * 120.00091 * 179.97438 * 12 11 10
15 15 N 1.31514 * 120.00203 * 0.02562 * 14 12 11
16 16 Si 1.86801 * 119.99787 * 179.97438 * 14 12 11
17 17 H 1.48495 * 109.47385 * 0.02562 * 16 14 12
18 18 H 1.48507 * 109.46827 * 120.00462 * 16 14 12
19 19 H 1.48502 * 109.47087 * 240.00355 * 16 14 12
20 20 C 1.48006 * 114.62670 * 318.08872 * 10 9 8
21 21 H 1.08999 * 109.47470 * 180.39515 * 1 2 3
22 22 H 1.08996 * 109.47315 * 300.39825 * 1 2 3
23 23 H 1.09006 * 109.47154 * 60.39515 * 1 2 3
24 24 H 1.09004 * 108.93637 * 40.86837 * 4 2 1
25 25 H 1.08995 * 108.86774 * 282.21176 * 4 2 1
26 26 H 1.08998 * 109.46986 * 297.37450 * 7 5 4
27 27 H 1.09000 * 109.47101 * 57.37350 * 7 5 4
28 28 H 1.09003 * 109.47002 * 177.37772 * 7 5 4
29 29 H 1.09002 * 109.63502 * 161.76373 * 8 5 4
30 30 H 1.08999 * 109.80338 * 41.25718 * 8 5 4
31 31 H 1.09005 * 108.81019 * 214.59831 * 9 8 5
32 32 H 1.09007 * 108.81239 * 332.86746 * 9 8 5
33 33 H 1.09006 * 109.47190 * 186.05152 * 11 10 9
34 34 H 1.08999 * 109.47176 * 306.04948 * 11 10 9
35 35 H 0.96995 * 120.00629 * 179.97438 * 15 14 12
36 36 H 1.09001 * 108.81119 * 197.22811 * 20 10 9
37 37 H 1.08992 * 108.81864 * 78.95160 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8962 1.0266 0.0000
4 6 2.0484 -0.7354 -1.2536
5 6 3.4405 -0.4116 -1.5459
6 1 3.5271 0.6625 -1.7096
7 6 3.8612 -1.1434 -2.8221
8 6 4.3874 -0.8213 -0.3984
9 6 4.2899 0.2107 0.6919
10 7 3.3039 -0.1480 1.7357
11 6 3.9044 -1.0280 2.7470
12 6 4.9675 -0.2729 3.5025
13 1 5.1764 0.7576 3.2557
14 6 5.6733 -0.8975 4.5088
15 7 5.4193 -2.1525 4.8090
16 14 6.9915 0.0383 5.4447
17 1 7.0832 1.4238 4.9183
18 1 6.6397 0.0794 6.8869
19 1 8.2992 -0.6442 5.2734
20 6 2.0395 -0.7185 1.2196
21 1 -0.3634 -1.0276 0.0071
22 1 -0.3634 0.5200 0.8863
23 1 -0.3634 0.5077 -0.8936
24 1 1.4329 -0.4547 -2.1083
25 1 1.9614 -1.8100 -1.0931
26 1 3.8000 -2.2197 -2.6607
27 1 3.1974 -0.8602 -3.6390
28 1 4.8860 -0.8718 -3.0757
29 1 5.4118 -0.8681 -0.7679
30 1 4.0941 -1.7957 -0.0077
31 1 5.2691 0.3238 1.1574
32 1 4.0017 1.1641 0.2489
33 1 3.1336 -1.3626 3.4413
34 1 4.3519 -1.8926 2.2568
35 1 5.9161 -2.5921 5.5166
36 1 1.2831 -0.6620 2.0025
37 1 2.2036 -1.7661 0.9675
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306419311.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:13
Heat of formation + Delta-G solvation = -39.246516 kcal
Electronic energy + Delta-G solvation = -14849.424146 eV
Core-core repulsion = 12624.835274 eV
Total energy + Delta-G solvation = -2224.588871 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.57718 -36.51556 -34.92187 -34.34063 -30.36002 -28.84856 -27.55705 -26.03818
-24.77745 -22.45161 -21.05584 -20.24443 -18.44447 -16.96248 -16.64620 -16.05922
-15.77548 -15.53811 -14.65174 -14.27915 -14.08294 -13.61622 -13.47910 -13.32601
-13.21223 -12.91447 -12.77871 -12.63736 -12.47908 -12.37428 -12.15225 -11.75814
-11.43334 -11.33429 -11.23220 -11.14919 -10.94017 -10.62932 -8.82467 -8.20087
-6.30876 1.39696 1.40505 1.54504 2.39730 3.11007 3.28166 3.73134
3.78628 3.99990 4.15234 4.27725 4.44428 4.55702 4.60976 4.72616
4.77658 4.83667 4.90597 4.93563 4.99588 5.03101 5.11241 5.16274
5.17858 5.24752 5.30848 5.38575 5.39933 5.50309 5.54281 5.59413
5.68038 6.09094 6.42776 6.73441 6.87155 7.38939 8.90683
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.039686 B = 0.008050 C = 0.007286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 705.369885 B = 3477.461652 C = 3842.143956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.087 4.087
3 H 0.074 0.926
4 C -0.103 4.103
5 C -0.085 4.085
6 H 0.076 0.924
7 C -0.142 4.142
8 C -0.134 4.134
9 C 0.068 3.932
10 N -0.558 5.558
11 C 0.214 3.786
12 C -0.520 4.520
13 H 0.062 0.938
14 C -0.001 4.001
15 N -0.936 5.936
16 Si 0.971 3.029
17 H -0.263 1.263
18 H -0.278 1.278
19 H -0.277 1.277
20 C 0.070 3.930
21 H 0.054 0.946
22 H 0.052 0.948
23 H 0.075 0.925
24 H 0.085 0.915
25 H 0.046 0.954
26 H 0.045 0.955
27 H 0.071 0.929
28 H 0.057 0.943
29 H 0.066 0.934
30 H 0.034 0.966
31 H 0.050 0.950
32 H 0.073 0.927
33 H -0.005 1.005
34 H -0.041 1.041
35 H 0.264 0.736
36 H 0.052 0.948
37 H 0.007 0.993
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.897 4.035 -13.728 15.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.106 4.106
3 H 0.093 0.907
4 C -0.141 4.141
5 C -0.104 4.104
6 H 0.094 0.906
7 C -0.199 4.199
8 C -0.173 4.173
9 C -0.060 4.060
10 N -0.283 5.283
11 C 0.088 3.912
12 C -0.559 4.559
13 H 0.081 0.919
14 C -0.199 4.199
15 N -0.577 5.577
16 Si 0.795 3.205
17 H -0.187 1.187
18 H -0.203 1.203
19 H -0.203 1.203
20 C -0.057 4.057
21 H 0.073 0.927
22 H 0.071 0.929
23 H 0.094 0.906
24 H 0.103 0.897
25 H 0.065 0.935
26 H 0.064 0.936
27 H 0.090 0.910
28 H 0.076 0.924
29 H 0.085 0.915
30 H 0.052 0.948
31 H 0.069 0.931
32 H 0.092 0.908
33 H 0.013 0.987
34 H -0.024 1.024
35 H 0.073 0.927
36 H 0.071 0.929
37 H 0.026 0.974
Dipole moment (debyes) X Y Z Total
from point charges -5.979 4.312 -13.408 15.301
hybrid contribution 0.987 -0.953 0.709 1.544
sum -4.991 3.360 -12.699 14.052
Atomic orbital electron populations
1.21761 0.93065 1.01999 1.02415 1.20953 0.96753 0.99792 0.93110
0.90742 1.20668 0.96102 0.99578 0.97726 1.20131 0.94767 1.00931
0.94533 0.90564 1.21876 1.01717 0.99832 0.96515 1.21890 1.00110
0.98542 0.96781 1.21741 0.95332 0.97922 0.90982 1.61881 1.05278
1.46600 1.14504 1.19264 0.92769 0.89954 0.89238 1.21517 1.18534
0.98487 1.17319 0.91939 1.25956 0.99935 0.95845 0.98143 1.70103
1.43051 1.12642 1.31927 0.85311 0.78182 0.78865 0.78119 1.18658
1.20333 1.20316 1.21848 0.91293 0.95531 0.97078 0.92666 0.92880
0.90577 0.89680 0.93496 0.93581 0.91049 0.92400 0.91494 0.94760
0.93140 0.90845 0.98736 1.02352 0.92722 0.92928 0.97446
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.02 8.89 71.98 0.64 -2.38 16
2 C -0.09 -2.47 2.41 -11.17 -0.03 -2.49 16
3 H 0.07 2.19 7.08 -2.39 -0.02 2.17 16
4 C -0.10 -2.56 3.89 28.86 0.11 -2.45 16
5 C -0.09 -2.18 2.25 -12.53 -0.03 -2.21 16
6 H 0.08 1.83 7.52 -2.39 -0.02 1.81 16
7 C -0.14 -2.98 8.99 71.98 0.65 -2.33 16
8 C -0.13 -4.58 4.90 30.21 0.15 -4.43 16
9 C 0.07 2.70 4.95 85.27 0.42 3.12 16
10 N -0.56 -25.46 4.67 -904.82 -4.22 -29.69 16
11 C 0.21 12.04 4.64 85.56 0.40 12.44 16
12 C -0.52 -30.60 8.18 25.60 0.21 -30.39 16
13 H 0.06 3.61 7.38 -2.91 -0.02 3.59 16
14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16
15 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16
16 Si 0.97 45.33 29.54 68.60 2.03 47.36 16
17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16
18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
20 C 0.07 2.67 4.50 85.26 0.38 3.05 16
21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
22 H 0.05 1.23 8.11 -2.39 -0.02 1.21 16
23 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16
24 H 0.08 1.65 7.96 -2.39 -0.02 1.63 16
25 H 0.05 1.26 7.51 -2.39 -0.02 1.25 16
26 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16
27 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16
28 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16
29 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16
30 H 0.03 1.35 6.62 -2.39 -0.02 1.33 16
31 H 0.05 2.28 6.55 -2.38 -0.02 2.26 16
32 H 0.07 2.58 6.59 -2.38 -0.02 2.56 16
33 H -0.01 -0.34 8.02 -2.38 -0.02 -0.35 16
34 H -0.04 -2.51 7.65 -2.39 -0.02 -2.53 16
35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16
36 H 0.05 2.05 7.69 -2.39 -0.02 2.03 16
37 H 0.01 0.30 6.49 -2.39 -0.02 0.28 16
Total: -1.00 -65.28 280.02 2.46 -62.82
By element:
Atomic # 1 Polarization: 3.91 SS G_CDS: 1.00 Total: 4.91 kcal
Atomic # 6 Polarization: -31.05 SS G_CDS: 3.37 Total: -27.69 kcal
Atomic # 7 Polarization: -83.47 SS G_CDS: -3.94 Total: -87.41 kcal
Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal
Total: -65.28 2.46 -62.82 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306419311.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.577 kcal
(2) G-P(sol) polarization free energy of solvation -65.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds