Wall clock time and date at job start Sun Mar 29 2020 21:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 108.97056 * 2 1 4 4 C 1.45869 * 109.04342 * 118.92051 * 2 1 3 5 5 C 1.53982 * 112.66409 * 182.06165 * 4 2 1 6 6 N 1.44307 * 108.31656 * 278.59868 * 5 4 2 7 7 C 1.46904 * 110.99955 * 221.35174 * 6 5 4 8 8 C 1.50701 * 109.47195 * 66.05004 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27796 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 C 1.47947 * 113.64933 * 95.39417 * 6 5 4 17 17 C 1.53919 * 113.33078 * 318.13801 * 16 6 5 18 18 H 1.08999 * 108.69540 * 78.58795 * 17 16 6 19 19 C 1.53001 * 108.78958 * 196.86310 * 17 16 6 20 20 C 1.50539 * 112.93893 * 317.75754 * 17 16 6 21 21 H 1.09005 * 109.46714 * 301.08318 * 1 2 3 22 22 H 1.08996 * 109.47475 * 61.07581 * 1 2 3 23 23 H 1.08996 * 109.47301 * 181.08388 * 1 2 3 24 24 H 1.09002 * 108.84733 * 61.24210 * 4 2 1 25 25 H 1.08999 * 108.84564 * 302.87991 * 4 2 1 26 26 H 1.09008 * 109.69432 * 158.89665 * 5 4 2 27 27 H 1.09001 * 109.69913 * 38.30480 * 5 4 2 28 28 H 1.09000 * 109.47038 * 306.04147 * 7 6 5 29 29 H 1.09007 * 109.46566 * 186.04679 * 7 6 5 30 30 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 31 31 H 1.08998 * 108.70878 * 79.13441 * 16 6 5 32 32 H 1.09000 * 108.70794 * 197.14349 * 16 6 5 33 33 H 1.08993 * 109.47093 * 183.41150 * 19 17 16 34 34 H 1.09000 * 109.46911 * 303.41283 * 19 17 16 35 35 H 1.09003 * 109.47083 * 63.41128 * 19 17 16 36 36 H 1.08998 * 109.56954 * 331.93355 * 20 17 16 37 37 H 1.09000 * 109.56939 * 211.56457 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8843 1.0308 0.0000 4 6 2.0059 -0.6668 1.2069 5 6 3.5418 -0.6692 1.3170 6 7 4.0531 -1.7458 0.5033 7 6 5.1488 -2.4470 1.1859 8 6 4.6133 -3.1454 2.4092 9 1 3.5641 -3.0751 2.6553 10 6 5.4641 -3.8689 3.2177 11 7 6.7418 -3.9543 2.9182 12 14 4.8017 -4.7282 4.7383 13 1 3.7637 -5.7120 4.3384 14 1 5.9103 -5.4331 5.4309 15 1 4.2047 -3.7233 5.6543 16 6 4.4594 -1.3220 -0.8547 17 6 3.4748 -0.3335 -1.5048 18 1 3.6502 0.6587 -1.0891 19 6 3.7422 -0.2903 -3.0107 20 6 2.0340 -0.7063 -1.2787 21 1 -0.3633 0.5306 0.8802 22 1 -0.3634 0.4970 -0.8994 23 1 -0.3634 -1.0274 0.0194 24 1 1.6517 -1.6976 1.2027 25 1 1.5915 -0.1578 2.0771 26 1 3.8354 -0.8224 2.3556 27 1 3.9373 0.2814 0.9592 28 1 5.9115 -1.7271 1.4830 29 1 5.5864 -3.1819 0.5102 30 1 7.3404 -4.4630 3.4872 31 1 5.4402 -0.8503 -0.7949 32 1 4.5372 -2.2057 -1.4881 33 1 3.0917 0.4514 -3.4740 34 1 4.7836 -0.0211 -3.1872 35 1 3.5418 -1.2704 -3.4435 36 1 1.9511 -1.7862 -1.1562 37 1 1.4359 -0.3869 -2.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306419314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:17 Heat of formation + Delta-G solvation = -21.887560 kcal Electronic energy + Delta-G solvation = -14840.850936 eV Core-core repulsion = 12617.014806 eV Total energy + Delta-G solvation = -2223.836130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94038 -34.97515 -33.78995 -32.29515 -28.59533 -27.09041 -26.33716 -24.40484 -22.93673 -20.87681 -19.73755 -18.73856 -16.35805 -15.30042 -14.95265 -14.58566 -14.23604 -13.80570 -13.11733 -12.74670 -12.58093 -12.40555 -12.19056 -11.97510 -11.62389 -11.51307 -11.23308 -10.87660 -10.80722 -10.49147 -10.31900 -10.17695 -10.07506 -9.88211 -9.79440 -9.51963 -9.13861 -8.39253 -7.01148 -5.98356 -3.99441 3.35799 3.39597 3.42773 4.45261 4.92978 4.94805 5.16356 5.27339 5.36377 5.43053 5.54945 5.63739 5.87032 5.92040 5.95529 6.01821 6.11332 6.11540 6.19655 6.23629 6.31067 6.42514 6.45531 6.55331 6.68579 6.71100 6.83783 6.89859 7.04820 7.38907 7.45569 7.89107 8.21162 8.41771 8.65874 9.09496 9.64606 11.12289 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036421 B = 0.008616 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.602749 B = 3248.926496 C = 3838.802322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.055 0.945 4 C -0.110 4.110 5 C 0.073 3.927 6 N -0.546 5.546 7 C 0.197 3.803 8 C -0.504 4.504 9 H 0.063 0.937 10 C 0.054 3.946 11 N -0.900 5.900 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.069 3.931 17 C -0.091 4.091 18 H 0.059 0.941 19 C -0.144 4.144 20 C -0.098 4.098 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.020 0.980 28 H -0.012 1.012 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 7.782 -7.433 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.056 4.056 6 N -0.271 5.271 7 C 0.072 3.928 8 C -0.543 4.543 9 H 0.081 0.919 10 C -0.147 4.147 11 N -0.540 5.540 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.059 4.059 17 C -0.110 4.110 18 H 0.077 0.923 19 C -0.201 4.201 20 C -0.135 4.135 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.006 0.994 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.558 7.386 -7.422 13.523 hybrid contribution 0.501 0.057 0.940 1.067 sum -8.058 7.443 -6.482 12.741 Atomic orbital electron populations 1.21905 0.96132 1.01563 1.00711 1.20142 0.94799 0.99109 0.96210 0.92633 1.20563 0.96902 1.01442 0.95939 1.21629 0.93621 0.91677 0.98683 1.60799 1.38245 1.26777 1.01285 1.19711 0.87134 0.92569 0.93371 1.21157 0.95128 1.30299 1.07687 0.91855 1.24992 0.94812 0.96733 0.98151 1.69953 1.03295 1.41943 1.38824 0.86578 0.78319 0.79751 0.82856 1.20201 1.21415 1.20311 1.22345 0.94906 0.96983 0.91656 1.20961 0.95878 0.99129 0.95051 0.92274 1.21879 1.01002 1.01475 0.95789 1.21400 0.94351 1.01758 0.96039 0.93247 0.93429 0.92745 0.91107 0.93450 0.90332 0.96212 0.99391 0.95550 0.92942 0.96333 0.92036 0.93066 0.93117 0.92643 0.90745 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.02 37.16 0.34 -1.45 16 2 C -0.08 -1.21 2.27 -93.19 -0.21 -1.42 16 3 H 0.06 0.78 7.59 -51.93 -0.39 0.39 16 4 C -0.11 -1.87 4.56 -29.59 -0.13 -2.00 16 5 C 0.07 1.46 5.00 -4.70 -0.02 1.44 16 6 N -0.55 -11.97 3.99 -236.06 -0.94 -12.92 16 7 C 0.20 5.24 4.58 -4.97 -0.02 5.21 16 8 C -0.50 -14.29 8.12 -34.44 -0.28 -14.57 16 9 H 0.06 1.77 7.61 -52.49 -0.40 1.37 16 10 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 12 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 C 0.07 1.29 4.74 -2.77 -0.01 1.28 16 17 C -0.09 -1.37 2.18 -91.37 -0.20 -1.57 16 18 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 19 C -0.14 -1.78 8.79 37.16 0.33 -1.46 16 20 C -0.10 -1.42 4.48 -27.16 -0.12 -1.54 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 25 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 26 H 0.08 1.76 6.73 -51.92 -0.35 1.41 16 27 H 0.02 0.37 6.79 -51.93 -0.35 0.02 16 28 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 29 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.02 0.36 8.02 -51.93 -0.42 -0.06 16 32 H 0.06 1.15 7.98 -51.93 -0.41 0.74 16 33 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.22 7.79 -51.93 -0.40 0.82 16 37 H 0.05 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -29.15 283.47 -8.21 -37.36 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.81 Total: -4.58 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.44 Total: -14.63 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.21 Total: -39.29 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.15 -8.21 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306419314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.473 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds