Wall clock time and date at job start Sun Mar 29 2020 21:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 108.74111 * 2 1 4 4 C 1.50751 * 108.85343 * 118.45836 * 2 1 3 5 5 C 1.54434 * 109.02481 * 213.82485 * 4 2 1 6 6 N 1.39778 * 111.76558 * 282.59173 * 5 4 2 7 7 C 1.46907 * 110.99703 * 189.13001 * 6 5 4 8 8 C 1.50695 * 109.47119 * 66.04385 * 7 6 5 9 9 H 1.07995 * 120.00496 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99572 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00327 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99951 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 59.99744 * 12 10 8 14 14 H 1.48503 * 109.47261 * 299.99924 * 12 10 8 15 15 H 1.48500 * 109.47454 * 179.97438 * 12 10 8 16 16 C 1.47629 * 114.76003 * 62.27744 * 6 5 4 17 17 C 1.50819 * 108.05380 * 277.19567 * 16 6 5 18 18 H 1.09006 * 109.04659 * 334.50619 * 17 16 6 19 19 C 1.53002 * 108.99475 * 215.57100 * 17 16 6 20 20 C 1.53822 * 111.62207 * 95.05710 * 17 16 6 21 21 H 1.08998 * 109.47277 * 301.54040 * 1 2 3 22 22 H 1.08999 * 109.47139 * 61.54068 * 1 2 3 23 23 H 1.09000 * 109.47322 * 181.54121 * 1 2 3 24 24 H 1.09001 * 109.54498 * 93.96194 * 4 2 1 25 25 H 1.08997 * 109.54654 * 333.68670 * 4 2 1 26 26 H 1.08999 * 109.01827 * 162.00229 * 5 4 2 27 27 H 1.08998 * 108.96183 * 43.13729 * 5 4 2 28 28 H 1.09002 * 109.46929 * 306.04335 * 7 6 5 29 29 H 1.08998 * 109.47035 * 186.05147 * 7 6 5 30 30 H 0.97006 * 119.99995 * 359.97438 * 11 10 8 31 31 H 1.08994 * 109.74786 * 36.83667 * 16 6 5 32 32 H 1.08999 * 109.74871 * 157.55684 * 16 6 5 33 33 H 1.09003 * 109.46645 * 297.91940 * 19 17 16 34 34 H 1.09001 * 109.46890 * 57.91471 * 19 17 16 35 35 H 1.08994 * 109.47131 * 177.91843 * 19 17 16 36 36 H 1.09000 * 108.97949 * 198.40207 * 20 17 16 37 37 H 1.08992 * 108.91579 * 79.63859 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8803 1.0323 0.0000 4 6 2.0172 -0.6798 1.2542 5 6 3.3277 -0.0056 1.7158 6 7 4.4210 -0.4184 0.9489 7 6 5.6825 0.0586 1.5313 8 6 5.9056 -0.6104 2.8630 9 1 5.1829 -1.3193 3.2391 10 6 7.0326 -0.3174 3.6014 11 7 7.9125 0.5462 3.1437 12 14 7.3096 -1.1471 5.2519 13 1 7.3781 -2.6183 5.0611 14 1 6.1863 -0.8184 6.1660 15 1 8.5848 -0.6649 5.8406 16 6 4.3362 -0.0741 -0.4842 17 6 3.5004 -1.1263 -1.1690 18 1 3.5566 -2.0528 -0.5975 19 6 4.0590 -1.3706 -2.5722 20 6 2.0282 -0.6951 -1.2828 21 1 -0.3634 0.5376 0.8758 22 1 -0.3633 0.4897 -0.9035 23 1 -0.3634 -1.0273 0.0276 24 1 2.2022 -1.7343 1.0492 25 1 1.2637 -0.5858 2.0362 26 1 3.5096 -0.2603 2.7599 27 1 3.2199 1.0755 1.6276 28 1 5.6329 1.1385 1.6709 29 1 6.5068 -0.1834 0.8604 30 1 7.7689 0.9768 2.2864 31 1 3.8670 0.9027 -0.6012 32 1 5.3357 -0.0576 -0.9187 33 1 3.9894 -0.4526 -3.1559 34 1 5.1027 -1.6767 -2.4996 35 1 3.4831 -2.1564 -3.0608 36 1 1.4142 -1.5761 -1.4700 37 1 1.9254 -0.0069 -2.1217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306419315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:18 Heat of formation + Delta-G solvation = -23.197484 kcal Electronic energy + Delta-G solvation = -14843.968947 eV Core-core repulsion = 12620.076014 eV Total energy + Delta-G solvation = -2223.892933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.17168 -35.22435 -33.69055 -32.56816 -28.62312 -26.86599 -26.37187 -24.45853 -22.83016 -21.16494 -20.11384 -18.66630 -16.72318 -15.21381 -15.08437 -14.73455 -14.43100 -13.68598 -13.12830 -13.06469 -12.59756 -12.40865 -12.35172 -12.10443 -11.93410 -11.36396 -11.11261 -10.97623 -10.78827 -10.65338 -10.40869 -10.18065 -10.13707 -10.00123 -9.79140 -9.71589 -8.61618 -8.33754 -7.11391 -6.33421 -4.02004 3.46178 3.48697 3.67113 4.54640 4.81275 4.93898 5.08604 5.13569 5.39064 5.44014 5.45670 5.59369 5.75253 5.80177 5.83352 5.94805 5.98595 6.02359 6.06545 6.11857 6.16454 6.34648 6.37541 6.40301 6.53992 6.61439 6.74152 6.78954 6.90792 7.10022 7.20746 7.93902 8.21843 8.57015 8.64056 8.90996 9.68778 11.05358 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039035 B = 0.008095 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.125287 B = 3458.024852 C = 3893.436790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.115 4.115 5 C 0.086 3.914 6 N -0.548 5.548 7 C 0.188 3.812 8 C -0.588 4.588 9 H 0.057 0.943 10 C 0.013 3.987 11 N -0.915 5.915 12 Si 1.072 2.928 13 H -0.287 1.287 14 H -0.289 1.289 15 H -0.283 1.283 16 C 0.069 3.931 17 C -0.091 4.091 18 H 0.082 0.918 19 C -0.144 4.144 20 C -0.102 4.102 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.000 1.000 28 H -0.022 1.022 29 H 0.019 0.981 30 H 0.266 0.734 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 -1.911 -7.773 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.153 4.153 5 C -0.044 4.044 6 N -0.271 5.271 7 C 0.063 3.937 8 C -0.627 4.627 9 H 0.075 0.925 10 C -0.190 4.190 11 N -0.552 5.552 12 Si 0.900 3.100 13 H -0.214 1.214 14 H -0.215 1.215 15 H -0.209 1.209 16 C -0.059 4.059 17 C -0.110 4.110 18 H 0.101 0.899 19 C -0.202 4.202 20 C -0.139 4.139 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.018 0.982 28 H -0.004 1.004 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.709 -2.464 -6.463 12.748 hybrid contribution -1.098 1.014 -1.422 2.063 sum -11.807 -1.450 -7.885 14.272 Atomic orbital electron populations 1.21935 0.95954 1.01344 1.01017 1.21049 0.94764 0.99975 0.95404 0.92046 1.21622 0.96934 1.00836 0.95884 1.20829 0.89671 0.94790 0.99142 1.58760 1.04000 1.63879 1.00472 1.19803 0.85650 0.92853 0.95397 1.22019 1.09437 1.27402 1.03806 0.92474 1.25846 0.92666 0.96425 1.04100 1.70794 1.36504 1.26554 1.21349 0.83503 0.76105 0.75651 0.74750 1.21388 1.21510 1.20860 1.21815 0.98845 0.95569 0.89630 1.21047 0.93693 1.00569 0.95662 0.89938 1.21891 1.00896 1.00740 0.96645 1.21993 0.95868 0.99494 0.96591 0.92947 0.93373 0.92922 0.91160 0.92242 0.89962 0.98190 1.00444 0.96339 0.92362 0.95531 0.91730 0.93317 0.92598 0.93248 0.92659 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.80 37.16 0.33 -1.36 16 2 C -0.09 -1.33 2.20 -91.13 -0.20 -1.53 16 3 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 4 C -0.11 -1.86 5.16 -27.11 -0.14 -2.00 16 5 C 0.09 1.75 4.80 -6.74 -0.03 1.72 16 6 N -0.55 -12.12 3.94 -241.45 -0.95 -13.07 16 7 C 0.19 4.99 4.03 -4.97 -0.02 4.97 16 8 C -0.59 -16.95 8.33 -34.44 -0.29 -17.24 16 9 H 0.06 1.64 7.10 -52.49 -0.37 1.27 16 10 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 11 N -0.92 -28.30 13.65 55.43 0.76 -27.55 16 12 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.07 1.28 4.89 -4.52 -0.02 1.26 16 17 C -0.09 -1.40 2.28 -91.28 -0.21 -1.61 16 18 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 19 C -0.14 -1.89 8.84 37.16 0.33 -1.56 16 20 C -0.10 -1.37 4.67 -25.69 -0.12 -1.49 16 21 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 25 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 26 H 0.08 1.87 6.41 -51.93 -0.33 1.54 16 27 H 0.00 0.00 7.54 -51.93 -0.39 -0.39 16 28 H -0.02 -0.62 7.97 -51.93 -0.41 -1.04 16 29 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 31 H 0.03 0.49 6.66 -51.93 -0.35 0.14 16 32 H 0.06 1.23 7.04 -51.93 -0.37 0.86 16 33 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 34 H 0.05 0.76 8.04 -51.93 -0.42 0.34 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.69 7.99 -51.93 -0.41 0.27 16 37 H 0.05 0.66 7.95 -51.93 -0.41 0.24 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -30.09 278.98 -8.09 -38.18 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.54 Total: -3.76 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.47 Total: -18.56 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.20 Total: -40.62 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.09 -8.09 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306419315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.980 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds