Wall clock time and date at job start Sun Mar 29 2020 21:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 108.74111 * 2 1 4 4 C 1.50751 * 108.85343 * 118.45836 * 2 1 3 5 5 C 1.54434 * 109.02481 * 213.82485 * 4 2 1 6 6 N 1.39778 * 111.76558 * 282.59173 * 5 4 2 7 7 C 1.46907 * 110.99703 * 189.13001 * 6 5 4 8 8 C 1.50695 * 109.47119 * 66.04385 * 7 6 5 9 9 H 1.07995 * 120.00496 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99572 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00327 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99951 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 59.99744 * 12 10 8 14 14 H 1.48503 * 109.47261 * 299.99924 * 12 10 8 15 15 H 1.48500 * 109.47454 * 179.97438 * 12 10 8 16 16 C 1.47629 * 114.76003 * 62.27744 * 6 5 4 17 17 C 1.50819 * 108.05380 * 277.19567 * 16 6 5 18 18 H 1.09006 * 109.04659 * 334.50619 * 17 16 6 19 19 C 1.53002 * 108.99475 * 215.57100 * 17 16 6 20 20 C 1.53822 * 111.62207 * 95.05710 * 17 16 6 21 21 H 1.08998 * 109.47277 * 301.54040 * 1 2 3 22 22 H 1.08999 * 109.47139 * 61.54068 * 1 2 3 23 23 H 1.09000 * 109.47322 * 181.54121 * 1 2 3 24 24 H 1.09001 * 109.54498 * 93.96194 * 4 2 1 25 25 H 1.08997 * 109.54654 * 333.68670 * 4 2 1 26 26 H 1.08999 * 109.01827 * 162.00229 * 5 4 2 27 27 H 1.08998 * 108.96183 * 43.13729 * 5 4 2 28 28 H 1.09002 * 109.46929 * 306.04335 * 7 6 5 29 29 H 1.08998 * 109.47035 * 186.05147 * 7 6 5 30 30 H 0.97006 * 119.99995 * 359.97438 * 11 10 8 31 31 H 1.08994 * 109.74786 * 36.83667 * 16 6 5 32 32 H 1.08999 * 109.74871 * 157.55684 * 16 6 5 33 33 H 1.09003 * 109.46645 * 297.91940 * 19 17 16 34 34 H 1.09001 * 109.46890 * 57.91471 * 19 17 16 35 35 H 1.08994 * 109.47131 * 177.91843 * 19 17 16 36 36 H 1.09000 * 108.97949 * 198.40207 * 20 17 16 37 37 H 1.08992 * 108.91579 * 79.63859 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8803 1.0323 0.0000 4 6 2.0172 -0.6798 1.2542 5 6 3.3277 -0.0056 1.7158 6 7 4.4210 -0.4184 0.9489 7 6 5.6825 0.0586 1.5313 8 6 5.9056 -0.6104 2.8630 9 1 5.1829 -1.3193 3.2391 10 6 7.0326 -0.3174 3.6014 11 7 7.9125 0.5462 3.1437 12 14 7.3096 -1.1471 5.2519 13 1 7.3781 -2.6183 5.0611 14 1 6.1863 -0.8184 6.1660 15 1 8.5848 -0.6649 5.8406 16 6 4.3362 -0.0741 -0.4842 17 6 3.5004 -1.1263 -1.1690 18 1 3.5566 -2.0528 -0.5975 19 6 4.0590 -1.3706 -2.5722 20 6 2.0282 -0.6951 -1.2828 21 1 -0.3634 0.5376 0.8758 22 1 -0.3633 0.4897 -0.9035 23 1 -0.3634 -1.0273 0.0276 24 1 2.2022 -1.7343 1.0492 25 1 1.2637 -0.5858 2.0362 26 1 3.5096 -0.2603 2.7599 27 1 3.2199 1.0755 1.6276 28 1 5.6329 1.1385 1.6709 29 1 6.5068 -0.1834 0.8604 30 1 7.7689 0.9768 2.2864 31 1 3.8670 0.9027 -0.6012 32 1 5.3357 -0.0576 -0.9187 33 1 3.9894 -0.4526 -3.1559 34 1 5.1027 -1.6767 -2.4996 35 1 3.4831 -2.1564 -3.0608 36 1 1.4142 -1.5761 -1.4700 37 1 1.9254 -0.0069 -2.1217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306419315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:18 Heat of formation + Delta-G solvation = -41.365885 kcal Electronic energy + Delta-G solvation = -14844.756788 eV Core-core repulsion = 12620.076014 eV Total energy + Delta-G solvation = -2224.680774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65957 -36.86536 -34.95658 -34.66117 -30.16599 -28.61907 -27.45378 -26.14731 -24.73363 -22.57809 -21.71398 -19.92785 -18.88153 -16.96826 -16.42991 -16.23869 -15.88192 -15.59253 -14.71489 -14.34985 -14.13190 -13.94553 -13.68654 -13.39780 -13.16540 -12.97723 -12.91811 -12.55138 -12.41987 -12.06168 -11.94159 -11.80575 -11.59798 -11.30847 -11.20347 -10.99698 -10.74571 -10.58736 -8.99054 -8.69268 -6.40893 1.51854 1.60789 1.80465 2.54699 3.11516 3.19156 3.78139 3.84583 3.95059 4.10833 4.17224 4.34858 4.50768 4.55793 4.60126 4.65712 4.77025 4.78172 4.83130 4.85186 4.96367 5.02560 5.04536 5.09654 5.21931 5.23027 5.27865 5.32298 5.48508 5.52108 5.62378 5.82417 6.01035 6.41314 6.58647 6.79838 7.40212 8.68023 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039035 B = 0.008095 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.125287 B = 3458.024852 C = 3893.436790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.045 0.955 4 C -0.101 4.101 5 C 0.085 3.915 6 N -0.551 5.551 7 C 0.198 3.802 8 C -0.600 4.600 9 H 0.055 0.945 10 C -0.039 4.039 11 N -0.938 5.938 12 Si 1.122 2.878 13 H -0.269 1.269 14 H -0.269 1.269 15 H -0.282 1.282 16 C 0.069 3.931 17 C -0.086 4.086 18 H 0.064 0.936 19 C -0.139 4.139 20 C -0.097 4.097 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.052 0.948 27 H -0.011 1.011 28 H -0.050 1.050 29 H -0.002 1.002 30 H 0.252 0.748 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 -3.001 -8.296 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.064 0.936 4 C -0.139 4.139 5 C -0.045 4.045 6 N -0.275 5.275 7 C 0.072 3.928 8 C -0.638 4.638 9 H 0.073 0.927 10 C -0.235 4.235 11 N -0.575 5.575 12 Si 0.942 3.058 13 H -0.194 1.194 14 H -0.194 1.194 15 H -0.208 1.208 16 C -0.058 4.058 17 C -0.105 4.105 18 H 0.082 0.918 19 C -0.196 4.196 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.007 0.993 28 H -0.032 1.032 29 H 0.016 0.984 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.766 -3.554 -7.020 14.997 hybrid contribution -0.468 1.393 -1.299 1.962 sum -13.235 -2.161 -8.320 15.781 Atomic orbital electron populations 1.21863 0.93349 1.02355 1.02001 1.21024 0.96932 0.98732 0.94600 0.93622 1.21530 0.94567 1.00180 0.97654 1.20862 0.91334 0.94657 0.97625 1.58798 1.02653 1.63725 1.02305 1.19533 0.87538 0.91030 0.94713 1.22320 1.09453 1.27262 1.04751 0.92678 1.27477 0.92326 0.96142 1.07605 1.70930 1.37527 1.27989 1.21074 0.82883 0.76613 0.75611 0.70674 1.19396 1.19398 1.20752 1.21942 0.99165 0.97181 0.87495 1.20973 0.94932 0.98250 0.96383 0.91776 1.21840 1.00426 1.02139 0.95236 1.21975 0.94146 1.00646 0.96656 0.92701 0.91832 0.91813 0.91461 0.90491 0.92914 0.99275 1.03214 0.98368 0.93892 0.95179 0.92931 0.92100 0.93741 0.90956 0.90639 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.80 71.98 0.63 -2.09 16 2 C -0.09 -2.45 2.20 -11.13 -0.02 -2.48 16 3 H 0.05 1.34 6.58 -2.38 -0.02 1.32 16 4 C -0.10 -3.16 5.16 30.35 0.16 -3.01 16 5 C 0.09 3.56 4.80 88.07 0.42 3.98 16 6 N -0.55 -25.13 3.94 -917.82 -3.62 -28.75 16 7 C 0.20 11.04 4.03 85.55 0.34 11.38 16 8 C -0.60 -35.56 8.33 25.60 0.21 -35.35 16 9 H 0.05 3.23 7.10 -2.91 -0.02 3.21 16 10 C -0.04 -2.29 5.46 84.66 0.46 -1.83 16 11 N -0.94 -59.57 13.65 21.45 0.29 -59.28 16 12 Si 1.12 51.46 29.90 68.60 2.05 53.51 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 16 C 0.07 2.60 4.89 85.45 0.42 3.02 16 17 C -0.09 -2.54 2.28 -11.22 -0.03 -2.57 16 18 H 0.06 2.14 7.26 -2.38 -0.02 2.13 16 19 C -0.14 -3.34 8.84 71.98 0.64 -2.71 16 20 C -0.10 -2.30 4.67 31.27 0.15 -2.16 16 21 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 2.16 7.11 -2.39 -0.02 2.14 16 25 H 0.08 2.13 7.68 -2.39 -0.02 2.11 16 26 H 0.05 2.48 6.41 -2.39 -0.02 2.46 16 27 H -0.01 -0.46 7.54 -2.39 -0.02 -0.48 16 28 H -0.05 -2.98 7.97 -2.39 -0.02 -3.00 16 29 H 0.00 -0.10 7.53 -2.39 -0.02 -0.12 16 30 H 0.25 16.29 7.22 -92.70 -0.67 15.62 16 31 H 0.03 1.10 6.66 -2.39 -0.02 1.09 16 32 H 0.05 2.07 7.04 -2.39 -0.02 2.05 16 33 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 34 H 0.04 1.16 8.04 -2.39 -0.02 1.14 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16 37 H 0.07 1.46 7.95 -2.39 -0.02 1.44 16 Total: -1.00 -66.58 278.98 3.21 -63.37 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 1.10 Total: 4.95 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.38 Total: -33.80 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -3.33 Total: -88.03 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -66.58 3.21 -63.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306419315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.000 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds