Wall clock time and date at job start Sun Mar 29 2020 21:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33875 * 124.51854 * 2 1 4 4 C 1.37390 * 115.11595 * 180.02562 * 3 2 1 5 5 C 1.36818 * 113.28056 * 0.02562 * 4 3 2 6 6 C 1.46332 * 125.47105 * 180.02562 * 5 4 3 7 7 O 1.21674 * 119.99646 * 359.97438 * 6 5 4 8 8 O 1.34898 * 120.00297 * 180.02562 * 6 5 4 9 9 C 1.34861 * 116.99831 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00447 * 359.97438 * 9 8 6 11 11 C 1.38785 * 119.99886 * 179.97438 * 9 8 6 12 12 N 1.31436 * 120.00062 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99961 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46954 * 90.00012 * 13 11 9 15 15 H 1.48498 * 109.47372 * 210.00160 * 13 11 9 16 16 H 1.48504 * 109.47351 * 330.00352 * 13 11 9 17 17 S 1.70620 * 124.50972 * 180.02562 * 2 1 3 18 18 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47186 * 299.99762 * 1 2 3 20 20 H 1.08997 * 109.47508 * 59.99441 * 1 2 3 21 21 H 1.08001 * 122.43723 * 0.05002 * 3 2 1 22 22 H 1.08005 * 123.36477 * 180.02562 * 4 3 2 23 23 H 0.96999 * 120.00245 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2656 1.1031 0.0000 4 6 3.6211 0.8786 -0.0006 5 6 3.9493 -0.4496 -0.0016 6 6 5.3099 -0.9882 -0.0018 7 8 6.2633 -0.2322 -0.0016 8 8 5.5072 -2.3226 -0.0034 9 6 6.7854 -2.7525 -0.0041 10 1 7.5955 -2.0382 -0.0038 11 6 7.0600 -4.1129 -0.0051 12 7 8.3058 -4.5320 -0.0053 13 14 5.6590 -5.3485 -0.0049 14 1 5.2868 -5.6750 -1.4050 15 1 6.0902 -6.5857 0.6940 16 1 4.4862 -4.7670 0.6963 17 16 2.4737 -1.4060 -0.0006 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 1.8429 2.0969 0.0008 22 1 4.3545 1.6715 -0.0002 23 1 8.4977 -5.4828 -0.0056 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306424148.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:22 Heat of formation + Delta-G solvation = -72.544451 kcal Electronic energy + Delta-G solvation = -11416.342607 eV Core-core repulsion = 9127.844754 eV Total energy + Delta-G solvation = -2288.497853 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.20377 -38.97771 -37.34365 -34.58299 -33.00743 -29.14957 -27.14338 -24.57820 -22.94790 -20.39789 -19.89343 -19.27465 -17.35404 -16.94592 -16.86023 -16.13462 -15.27097 -14.87503 -14.55076 -14.19870 -13.94818 -13.52346 -13.35886 -12.90464 -12.73790 -12.46734 -12.34208 -11.93603 -11.77777 -11.37863 -10.89768 -9.68766 -9.59557 -8.61534 -6.47036 -0.57755 0.45354 0.96758 1.24304 1.29285 1.41108 1.51079 2.00863 2.21211 2.31257 2.86905 3.87051 4.23654 4.27053 4.42571 4.71106 4.81689 5.07872 5.11049 5.18565 5.40321 5.44726 5.81709 6.38030 6.72414 7.44051 8.51054 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.046096 B = 0.009717 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.277588 B = 2880.755741 C = 3472.889795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.182 4.182 3 C -0.162 4.162 4 C -0.048 4.048 5 C -0.284 4.284 6 C 0.479 3.521 7 O -0.571 6.571 8 O -0.249 6.249 9 C -0.409 4.409 10 H 0.059 0.941 11 C 0.019 3.981 12 N -0.909 5.909 13 Si 0.975 3.025 14 H -0.255 1.255 15 H -0.258 1.258 16 H -0.249 1.249 17 S 0.227 5.773 18 H 0.077 0.923 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.181 0.819 22 H 0.150 0.850 23 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.220 5.644 0.022 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.302 4.302 3 C -0.191 4.191 4 C -0.082 4.082 5 C -0.401 4.401 6 C 0.328 3.672 7 O -0.469 6.469 8 O -0.159 6.159 9 C -0.485 4.485 10 H 0.077 0.923 11 C -0.182 4.182 12 N -0.548 5.548 13 Si 0.794 3.206 14 H -0.179 1.179 15 H -0.182 1.182 16 H -0.172 1.172 17 S 0.496 5.504 18 H 0.096 0.904 19 H 0.118 0.882 20 H 0.118 0.882 21 H 0.198 0.802 22 H 0.167 0.833 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.133 4.077 0.026 20.542 hybrid contribution 1.205 1.212 -0.014 1.710 sum -18.927 5.289 0.012 19.653 Atomic orbital electron populations 1.20578 0.84096 1.04382 1.05107 1.24968 1.03405 0.96888 1.04967 1.20081 0.90590 1.01427 1.06999 1.21008 0.98046 0.93564 0.95536 1.23542 0.94212 0.99093 1.23298 1.20152 0.88904 0.81193 0.76949 1.90683 1.44520 1.59781 1.51907 1.83576 1.30817 1.23159 1.78300 1.20366 0.79839 0.93530 1.54778 0.92305 1.25574 1.00511 0.98146 0.93923 1.69684 1.20196 1.17777 1.47182 0.85201 0.78176 0.76958 0.80293 1.17935 1.18224 1.17206 1.83257 0.92329 1.07744 1.67119 0.90429 0.88204 0.88181 0.80167 0.83270 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.33 71.24 0.74 -0.28 14 2 C -0.18 -3.98 6.28 24.69 0.16 -3.82 14 3 C -0.16 -3.72 9.99 21.08 0.21 -3.51 14 4 C -0.05 -1.54 10.01 21.74 0.22 -1.32 14 5 C -0.28 -11.40 6.45 24.04 0.16 -11.25 14 6 C 0.48 25.60 7.86 69.93 0.55 26.15 14 7 O -0.57 -34.22 16.09 19.27 0.31 -33.91 14 8 O -0.25 -14.26 8.43 9.57 0.08 -14.18 14 9 C -0.41 -26.29 10.11 67.95 0.69 -25.60 14 10 H 0.06 4.27 7.09 -2.91 -0.02 4.25 14 11 C 0.02 1.15 5.49 84.88 0.47 1.61 14 12 N -0.91 -55.73 13.96 21.63 0.30 -55.42 14 13 Si 0.98 44.13 28.62 68.60 1.96 46.09 14 14 H -0.26 -10.86 7.11 99.48 0.71 -10.15 14 15 H -0.26 -10.70 7.11 99.48 0.71 -10.00 14 16 H -0.25 -10.82 7.11 99.48 0.71 -10.12 14 17 S 0.23 6.94 22.85 -56.49 -1.29 5.65 14 18 H 0.08 0.86 8.11 -2.39 -0.02 0.84 14 19 H 0.10 0.89 8.14 -2.39 -0.02 0.87 14 20 H 0.10 0.89 8.14 -2.39 -0.02 0.87 14 21 H 0.18 2.72 8.06 -2.91 -0.02 2.70 14 22 H 0.15 4.74 8.06 -2.91 -0.02 4.72 14 23 H 0.29 16.01 8.31 -92.71 -0.77 15.24 14 Total: -1.00 -76.34 233.71 5.77 -70.57 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 1.22 Total: -0.79 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.18 Total: -18.02 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.30 Total: -55.42 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: 0.39 Total: -48.09 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.96 Total: 46.09 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.29 Total: 5.65 kcal Total: -76.34 5.77 -70.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306424148.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.970 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds