Wall clock time and date at job start Sun Mar 29 2020 21:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38306 * 120.74728 * 2 1 4 4 N 1.32382 * 119.27007 * 179.72699 * 3 2 1 5 5 C 1.32547 * 120.88276 * 0.50862 * 4 3 2 6 6 S 1.76194 * 119.18645 * 179.76175 * 5 4 3 7 7 C 1.76194 * 100.00157 * 359.72301 * 6 5 4 8 8 H 1.08004 * 120.00079 * 0.27401 * 7 6 5 9 9 C 1.38785 * 120.00281 * 180.02562 * 7 6 5 10 10 N 1.31561 * 119.99863 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99673 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47326 * 90.00378 * 11 9 7 13 13 H 1.48506 * 109.46545 * 210.00128 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99839 * 11 9 7 15 15 N 1.32529 * 121.62775 * 359.47580 * 5 4 3 16 16 C 1.32706 * 120.64416 * 0.25682 * 15 5 4 17 17 O 1.35516 * 120.46863 * 179.97438 * 16 15 5 18 18 H 1.09003 * 109.47312 * 270.02668 * 1 2 3 19 19 H 1.08993 * 109.47089 * 30.02413 * 1 2 3 20 20 H 1.08997 * 109.47210 * 150.02419 * 1 2 3 21 21 H 1.08006 * 120.37049 * 359.97219 * 3 2 1 22 22 H 0.97000 * 120.00099 * 180.02562 * 10 9 7 23 23 H 0.96698 * 113.99985 * 90.00361 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1886 0.0000 4 7 3.5375 1.1545 0.0055 5 6 4.1883 -0.0001 0.0009 6 16 5.9502 0.0066 0.0021 7 6 6.2496 1.7430 0.0016 8 1 5.4196 2.4340 0.0052 9 6 7.5519 2.2227 0.0018 10 7 7.7753 3.5192 0.0009 11 14 8.9874 1.0274 0.0019 12 1 9.3680 0.7108 -1.3981 13 1 10.1435 1.6426 0.7022 14 1 8.5919 -0.2211 0.7018 15 7 3.5465 -1.1597 0.0010 16 6 2.2200 -1.1986 0.0006 17 8 1.5674 -2.3862 0.0002 18 1 -0.3634 0.0005 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 1.6924 2.1344 -0.0005 22 1 8.6855 3.8545 0.0006 23 1 1.3777 -2.7311 0.8834 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306445999.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:10 Heat of formation + Delta-G solvation = -28.975626 kcal Electronic energy + Delta-G solvation = -11398.913423 eV Core-core repulsion = 9144.597607 eV Total energy + Delta-G solvation = -2254.315816 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.92611 -38.53343 -34.82845 -34.65440 -33.52968 -28.61477 -27.88120 -25.15881 -23.97648 -20.66251 -19.92345 -18.64827 -17.65702 -17.15557 -16.38735 -15.58522 -15.23683 -14.99920 -14.79103 -13.88637 -13.70698 -13.23376 -13.12446 -13.08654 -13.02085 -12.06435 -11.67380 -11.37792 -11.33607 -11.04600 -10.60458 -10.14521 -9.03958 -8.54121 -6.34428 -0.22210 0.11288 0.63600 1.30694 1.37556 1.46239 2.14129 2.27438 2.52487 2.74256 2.86327 3.57543 3.71765 4.00708 4.09054 4.53381 4.87261 5.04741 5.09171 5.44531 5.73211 5.97972 6.38862 6.56239 6.83736 7.03285 8.58024 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.062241 B = 0.008719 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.756940 B = 3210.526586 C = 3642.602309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.227 4.227 3 C 0.157 3.843 4 N -0.548 5.548 5 C 0.296 3.704 6 S 0.070 5.930 7 C -0.550 4.550 8 H 0.088 0.912 9 C 0.050 3.950 10 N -0.905 5.905 11 Si 0.904 3.096 12 H -0.254 1.254 13 H -0.250 1.250 14 H -0.226 1.226 15 N -0.560 5.560 16 C 0.357 3.643 17 O -0.473 6.473 18 H 0.090 0.910 19 H 0.085 0.915 20 H 0.078 0.922 21 H 0.197 0.803 22 H 0.281 0.719 23 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 -8.290 1.960 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.239 4.239 3 C -0.011 4.011 4 N -0.267 5.267 5 C -0.076 4.076 6 S 0.311 5.689 7 C -0.699 4.699 8 H 0.106 0.894 9 C -0.157 4.157 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.179 1.179 13 H -0.174 1.174 14 H -0.149 1.149 15 N -0.289 5.289 16 C 0.165 3.835 17 O -0.283 6.283 18 H 0.109 0.891 19 H 0.104 0.896 20 H 0.097 0.903 21 H 0.214 0.786 22 H 0.091 0.909 23 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -10.176 -9.005 1.385 13.658 hybrid contribution -0.968 0.972 0.387 1.425 sum -11.144 -8.033 1.772 13.851 Atomic orbital electron populations 1.20558 0.85521 1.04385 1.03881 1.21924 1.01198 0.92554 1.08186 1.23738 0.88452 0.99761 0.89151 1.68853 1.11398 1.29008 1.17439 1.24858 1.02065 0.85144 0.95577 1.82689 0.90490 1.10426 1.85309 1.22827 0.97664 0.90582 1.58785 0.89402 1.25642 1.00666 0.96961 0.92431 1.69976 1.23093 1.13828 1.47179 0.86070 0.79870 0.80717 0.80936 1.17860 1.17416 1.14944 1.67954 1.11244 1.29709 1.20013 1.19512 0.86104 0.86745 0.91124 1.84637 1.74040 1.33696 1.35923 0.89148 0.89605 0.90269 0.78613 0.90912 0.71335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.85 71.24 0.70 -0.74 14 2 C -0.23 -6.44 5.93 -19.55 -0.12 -6.55 14 3 C 0.16 5.34 10.99 84.63 0.93 6.27 14 4 N -0.55 -25.32 8.45 -196.63 -1.66 -26.99 14 5 C 0.30 14.10 7.84 180.44 1.41 15.52 14 6 S 0.07 3.56 19.80 -56.49 -1.12 2.44 14 7 C -0.55 -32.40 9.79 67.95 0.66 -31.74 14 8 H 0.09 5.70 6.73 -2.91 -0.02 5.68 14 9 C 0.05 2.86 5.50 84.86 0.47 3.32 14 10 N -0.90 -54.19 13.96 21.64 0.30 -53.89 14 11 Si 0.90 41.23 27.74 68.60 1.90 43.14 14 12 H -0.25 -11.22 7.11 99.48 0.71 -10.51 14 13 H -0.25 -10.69 7.11 99.48 0.71 -9.99 14 14 H -0.23 -9.79 6.74 99.48 0.67 -9.12 14 15 N -0.56 -23.65 10.42 -309.34 -3.22 -26.88 14 16 C 0.36 11.75 7.81 84.86 0.66 12.42 14 17 O -0.47 -11.64 12.74 -88.19 -1.12 -12.77 14 18 H 0.09 1.17 8.14 -2.39 -0.02 1.15 14 19 H 0.09 1.19 8.10 -2.39 -0.02 1.17 14 20 H 0.08 1.26 7.62 -2.39 -0.02 1.24 14 21 H 0.20 5.01 8.06 -2.91 -0.02 4.99 14 22 H 0.28 15.36 8.31 -92.71 -0.77 14.59 14 23 H 0.42 5.67 9.06 -74.06 -0.67 5.00 14 Total: -1.00 -72.59 227.80 0.34 -72.25 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 0.54 Total: 4.19 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 4.72 Total: -1.51 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.58 Total: -107.75 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.12 Total: -12.77 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.90 Total: 43.14 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.12 Total: 2.44 kcal Total: -72.59 0.34 -72.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306445999.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.275 kcal (2) G-P(sol) polarization free energy of solvation -72.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds