Wall clock time and date at job start Sun Mar 29 2020 21:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00318 * 2 1 4 4 H 1.07992 * 120.00322 * 219.01444 * 3 2 1 5 5 C 1.38813 * 119.99860 * 39.00948 * 3 2 1 6 6 N 1.31627 * 119.99876 * 26.30624 * 5 3 2 7 7 Si 1.86795 * 120.00284 * 206.30160 * 5 3 2 8 8 H 1.48499 * 109.47161 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47424 * 240.00227 * 7 5 3 10 10 H 1.48506 * 109.47348 * 120.00386 * 7 5 3 11 11 C 1.46498 * 120.00141 * 180.02562 * 2 1 3 12 12 C 1.53017 * 109.47345 * 59.99500 * 11 2 1 13 13 C 1.52980 * 109.46120 * 164.04931 * 12 11 2 14 14 C 1.52984 * 109.51305 * 315.99075 * 13 12 11 15 15 C 1.53008 * 109.46971 * 112.93407 * 14 13 12 16 16 C 1.53006 * 109.43097 * 284.04137 * 15 14 13 17 17 C 1.52991 * 109.48218 * 75.96840 * 16 15 14 18 18 C 1.52998 * 109.50070 * 247.06101 * 17 16 15 19 19 H 1.09003 * 109.47657 * 95.28448 * 1 2 3 20 20 H 1.08998 * 109.47516 * 215.28945 * 1 2 3 21 21 H 1.09004 * 109.47323 * 335.28790 * 1 2 3 22 22 H 0.97001 * 119.99651 * 5.35735 * 6 5 3 23 23 H 1.08996 * 109.47366 * 180.02562 * 11 2 1 24 24 H 1.09001 * 109.47035 * 284.04869 * 12 11 2 25 25 H 1.08996 * 109.46937 * 44.04840 * 12 11 2 26 26 H 1.09000 * 109.46715 * 195.97834 * 13 12 11 27 27 H 1.09009 * 109.46150 * 75.99741 * 13 12 11 28 28 H 1.08999 * 109.47053 * 352.93562 * 14 13 12 29 29 H 1.09001 * 109.47212 * 232.93498 * 14 13 12 30 30 H 1.09006 * 109.47568 * 164.05734 * 15 14 13 31 31 H 1.08993 * 109.48425 * 44.03879 * 15 14 13 32 32 H 1.08996 * 109.47377 * 315.96082 * 16 15 14 33 33 H 1.08998 * 109.46419 * 195.96347 * 16 15 14 34 34 H 1.08997 * 109.46713 * 127.05010 * 17 16 15 35 35 H 1.09000 * 109.45591 * 7.06398 * 17 16 15 36 36 H 1.08994 * 109.47653 * 284.01464 * 18 17 16 37 37 H 1.09003 * 109.47155 * 164.00572 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0490 1.2902 -0.5887 5 6 1.6878 2.2540 0.7567 6 7 0.9579 2.0336 1.8296 7 14 2.1022 4.0043 0.2525 8 1 2.9288 3.9816 -0.9809 9 1 2.8594 4.6679 1.3442 10 1 0.8474 4.7550 -0.0068 11 6 2.1975 -1.2687 -0.0006 12 6 1.8278 -2.0706 -1.2502 13 6 2.8559 -3.1829 -1.4647 14 6 4.2643 -2.6253 -1.2503 15 6 4.8796 -3.2603 -0.0016 16 6 4.2643 -2.6264 1.2477 17 6 2.8559 -3.1843 1.4619 18 6 1.8278 -2.0715 1.2485 19 1 -0.3634 -0.0946 -1.0233 20 1 -0.3634 -0.8388 0.5937 21 1 -0.3634 0.9336 0.4296 22 1 0.8076 1.1255 2.1357 23 1 3.2691 -1.0695 0.0000 24 1 0.8387 -2.5100 -1.1205 25 1 1.8210 -1.4099 -2.1171 26 1 2.7684 -3.5675 -2.4808 27 1 2.6725 -3.9890 -0.7542 28 1 4.2111 -1.5444 -1.1197 29 1 4.8825 -2.8564 -2.1178 30 1 5.9566 -3.0921 -0.0015 31 1 4.6791 -4.3316 -0.0021 32 1 4.2110 -1.5455 1.1181 33 1 4.8826 -2.8584 2.1148 34 1 2.7685 -3.5697 2.4777 35 1 2.6723 -3.9897 0.7507 36 1 1.8214 -1.4115 2.1159 37 1 0.8387 -2.5107 1.1186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306446456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:13 Heat of formation + Delta-G solvation = 7.223024 kcal Electronic energy + Delta-G solvation = -15343.807122 eV Core-core repulsion = 13121.233322 eV Total energy + Delta-G solvation = -2222.573801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.02983 -35.27616 -32.35969 -32.17486 -29.81989 -26.16214 -25.41120 -25.27133 -22.06943 -21.01245 -20.23248 -18.36225 -17.26353 -15.42841 -14.79322 -13.87765 -13.72277 -13.70259 -13.45906 -13.28229 -12.86884 -12.82523 -11.96283 -11.60730 -11.27413 -10.90747 -10.83476 -10.59546 -10.54903 -10.48934 -10.35261 -10.31609 -10.03931 -9.99061 -9.48127 -9.23045 -9.05691 -8.25364 -6.68311 -5.95189 -3.29796 3.52946 3.55549 3.69776 4.62654 4.99790 5.16724 5.21484 5.39292 5.45946 5.56469 5.62658 5.70988 5.73659 5.86219 5.99489 6.01970 6.31712 6.33323 6.35832 6.41826 6.43825 6.50298 6.54617 6.62468 6.67356 6.74640 6.83895 6.86313 6.92554 7.22836 7.26053 7.30910 8.20653 8.67501 9.26188 9.91339 10.41883 11.22433 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037047 B = 0.009751 C = 0.009494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.624471 B = 2870.672385 C = 2948.524292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.596 5.596 3 C -0.353 4.353 4 H 0.047 0.953 5 C -0.019 4.019 6 N -0.906 5.906 7 Si 1.066 2.934 8 H -0.291 1.291 9 H -0.294 1.294 10 H -0.290 1.290 11 C 0.157 3.843 12 C -0.129 4.129 13 C -0.121 4.121 14 C -0.131 4.131 15 C -0.114 4.114 16 C -0.131 4.131 17 C -0.121 4.121 18 C -0.132 4.132 19 H -0.005 1.005 20 H 0.016 0.984 21 H 0.063 0.937 22 H 0.270 0.730 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 -9.972 -3.430 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.318 5.318 3 C -0.482 4.482 4 H 0.065 0.935 5 C -0.223 4.223 6 N -0.544 5.544 7 Si 0.896 3.104 8 H -0.217 1.217 9 H -0.221 1.221 10 H -0.217 1.217 11 C 0.051 3.949 12 C -0.168 4.168 13 C -0.159 4.159 14 C -0.168 4.168 15 C -0.151 4.151 16 C -0.169 4.169 17 C -0.158 4.158 18 C -0.171 4.171 19 H 0.013 0.987 20 H 0.034 0.966 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.096 -8.339 -3.070 9.785 hybrid contribution 0.136 -1.681 -0.335 1.719 sum 4.233 -10.019 -3.405 11.397 Atomic orbital electron populations 1.21017 0.85240 1.00214 0.96242 1.43923 1.00478 1.01120 1.86324 1.19856 1.11947 0.90800 1.25627 0.93500 1.25944 0.99401 1.03953 0.92957 1.70706 1.40577 1.24287 1.18875 0.83538 0.76009 0.75669 0.75201 1.21739 1.22114 1.21704 1.21104 0.97528 0.85866 0.90440 1.22110 0.97430 0.96875 1.00402 1.21803 0.95087 0.98747 1.00281 1.21844 0.95913 1.02085 0.96934 1.21669 0.99005 0.99273 0.95192 1.21849 0.95924 1.02228 0.96848 1.21802 0.95146 0.98659 1.00241 1.22173 0.97269 0.96931 1.00767 0.98691 0.96572 0.91893 0.91966 0.89393 0.93436 0.92397 0.93365 0.91506 0.90166 0.93092 0.92801 0.92506 0.89981 0.93075 0.93410 0.91662 0.92145 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.90 9.18 59.84 0.55 3.45 16 2 N -0.60 -15.16 2.46 -173.47 -0.43 -15.58 16 3 C -0.35 -9.96 9.27 -15.06 -0.14 -10.10 16 4 H 0.05 1.35 7.95 -52.49 -0.42 0.93 16 5 C -0.02 -0.54 4.74 -17.43 -0.08 -0.62 16 6 N -0.91 -27.34 12.35 55.49 0.69 -26.65 16 7 Si 1.07 25.64 29.99 -169.99 -5.10 20.55 16 8 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.16 3.29 2.00 -67.91 -0.14 3.16 16 12 C -0.13 -2.36 4.80 -26.73 -0.13 -2.49 16 13 C -0.12 -1.82 5.48 -26.75 -0.15 -1.96 16 14 C -0.13 -1.92 5.47 -26.74 -0.15 -2.07 16 15 C -0.11 -1.54 5.59 -26.72 -0.15 -1.69 16 16 C -0.13 -2.02 5.47 -26.73 -0.15 -2.16 16 17 C -0.12 -1.89 5.48 -26.74 -0.15 -2.04 16 18 C -0.13 -2.55 4.58 -26.72 -0.12 -2.67 16 19 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 20 H 0.02 0.36 6.85 -51.93 -0.36 0.00 16 21 H 0.06 1.71 5.83 -51.93 -0.30 1.40 16 22 H 0.27 8.22 7.41 -40.82 -0.30 7.92 16 23 H 0.09 1.89 2.58 -51.93 -0.13 1.76 16 24 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.95 4.69 -51.92 -0.24 0.70 16 28 H 0.08 1.39 5.47 -51.93 -0.28 1.10 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.70 7.47 -51.93 -0.39 0.31 16 32 H 0.08 1.50 5.47 -51.93 -0.28 1.21 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.94 4.69 -51.93 -0.24 0.70 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.05 0.88 7.14 -51.93 -0.37 0.50 16 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -29.35 266.69 -7.52 -36.88 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.91 Total: -0.02 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.79 Total: -19.19 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.26 Total: -42.23 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.10 Total: 20.55 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.35 -7.52 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306446456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.101 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds