Wall clock time and date at job start Sun Mar 29 2020 21:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00318 * 2 1 4 4 H 1.07992 * 120.00322 * 219.01444 * 3 2 1 5 5 C 1.38813 * 119.99860 * 39.00948 * 3 2 1 6 6 N 1.31627 * 119.99876 * 26.30624 * 5 3 2 7 7 Si 1.86795 * 120.00284 * 206.30160 * 5 3 2 8 8 H 1.48499 * 109.47161 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47424 * 240.00227 * 7 5 3 10 10 H 1.48506 * 109.47348 * 120.00386 * 7 5 3 11 11 C 1.46498 * 120.00141 * 180.02562 * 2 1 3 12 12 C 1.53017 * 109.47345 * 59.99500 * 11 2 1 13 13 C 1.52980 * 109.46120 * 164.04931 * 12 11 2 14 14 C 1.52984 * 109.51305 * 315.99075 * 13 12 11 15 15 C 1.53008 * 109.46971 * 112.93407 * 14 13 12 16 16 C 1.53006 * 109.43097 * 284.04137 * 15 14 13 17 17 C 1.52991 * 109.48218 * 75.96840 * 16 15 14 18 18 C 1.52998 * 109.50070 * 247.06101 * 17 16 15 19 19 H 1.09003 * 109.47657 * 95.28448 * 1 2 3 20 20 H 1.08998 * 109.47516 * 215.28945 * 1 2 3 21 21 H 1.09004 * 109.47323 * 335.28790 * 1 2 3 22 22 H 0.97001 * 119.99651 * 5.35735 * 6 5 3 23 23 H 1.08996 * 109.47366 * 180.02562 * 11 2 1 24 24 H 1.09001 * 109.47035 * 284.04869 * 12 11 2 25 25 H 1.08996 * 109.46937 * 44.04840 * 12 11 2 26 26 H 1.09000 * 109.46715 * 195.97834 * 13 12 11 27 27 H 1.09009 * 109.46150 * 75.99741 * 13 12 11 28 28 H 1.08999 * 109.47053 * 352.93562 * 14 13 12 29 29 H 1.09001 * 109.47212 * 232.93498 * 14 13 12 30 30 H 1.09006 * 109.47568 * 164.05734 * 15 14 13 31 31 H 1.08993 * 109.48425 * 44.03879 * 15 14 13 32 32 H 1.08996 * 109.47377 * 315.96082 * 16 15 14 33 33 H 1.08998 * 109.46419 * 195.96347 * 16 15 14 34 34 H 1.08997 * 109.46713 * 127.05010 * 17 16 15 35 35 H 1.09000 * 109.45591 * 7.06398 * 17 16 15 36 36 H 1.08994 * 109.47653 * 284.01464 * 18 17 16 37 37 H 1.09003 * 109.47155 * 164.00572 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0490 1.2902 -0.5887 5 6 1.6878 2.2540 0.7567 6 7 0.9579 2.0336 1.8296 7 14 2.1022 4.0043 0.2525 8 1 2.9288 3.9816 -0.9809 9 1 2.8594 4.6679 1.3442 10 1 0.8474 4.7550 -0.0068 11 6 2.1975 -1.2687 -0.0006 12 6 1.8278 -2.0706 -1.2502 13 6 2.8559 -3.1829 -1.4647 14 6 4.2643 -2.6253 -1.2503 15 6 4.8796 -3.2603 -0.0016 16 6 4.2643 -2.6264 1.2477 17 6 2.8559 -3.1843 1.4619 18 6 1.8278 -2.0715 1.2485 19 1 -0.3634 -0.0946 -1.0233 20 1 -0.3634 -0.8388 0.5937 21 1 -0.3634 0.9336 0.4296 22 1 0.8076 1.1255 2.1357 23 1 3.2691 -1.0695 0.0000 24 1 0.8387 -2.5100 -1.1205 25 1 1.8210 -1.4099 -2.1171 26 1 2.7684 -3.5675 -2.4808 27 1 2.6725 -3.9890 -0.7542 28 1 4.2111 -1.5444 -1.1197 29 1 4.8825 -2.8564 -2.1178 30 1 5.9566 -3.0921 -0.0015 31 1 4.6791 -4.3316 -0.0021 32 1 4.2110 -1.5455 1.1181 33 1 4.8826 -2.8584 2.1148 34 1 2.7685 -3.5697 2.4777 35 1 2.6723 -3.9897 0.7507 36 1 1.8214 -1.4115 2.1159 37 1 0.8387 -2.5107 1.1186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306446456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:12 Heat of formation + Delta-G solvation = -8.672015 kcal Electronic energy + Delta-G solvation = -15344.496383 eV Core-core repulsion = 13121.233322 eV Total energy + Delta-G solvation = -2223.263061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47688 -37.10690 -33.95538 -33.66319 -31.63108 -28.10689 -26.98707 -26.76980 -23.91194 -22.40526 -21.54718 -19.98438 -19.23498 -17.03817 -16.41513 -15.67204 -15.38541 -15.04079 -14.97524 -14.92535 -14.68509 -14.10961 -13.56870 -13.32550 -12.88344 -12.54446 -12.47503 -12.26899 -12.14499 -11.97863 -11.91679 -11.88478 -11.64217 -11.48077 -11.22713 -10.66206 -10.55539 -10.37074 -8.83096 -8.14084 -5.52186 1.56022 1.63549 1.80774 2.63839 3.20749 3.55131 3.78041 4.02852 4.06200 4.22329 4.31020 4.36294 4.40803 4.42515 4.59924 4.65349 4.81197 4.88190 4.89858 5.03417 5.04357 5.09190 5.17037 5.18171 5.24158 5.30238 5.30321 5.41353 5.47348 5.53601 5.73060 5.74938 5.95892 6.40958 7.17552 7.80676 8.28966 8.95479 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037047 B = 0.009751 C = 0.009494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.624471 B = 2870.672385 C = 2948.524292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.614 5.614 3 C -0.359 4.359 4 H 0.036 0.964 5 C -0.068 4.068 6 N -0.929 5.929 7 Si 1.114 2.886 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.286 1.286 11 C 0.151 3.849 12 C -0.120 4.120 13 C -0.114 4.114 14 C -0.130 4.130 15 C -0.108 4.108 16 C -0.131 4.131 17 C -0.113 4.113 18 C -0.123 4.123 19 H 0.004 0.996 20 H 0.030 0.970 21 H 0.033 0.967 22 H 0.254 0.746 23 H 0.082 0.918 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.021 0.979 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -11.718 -4.304 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.337 5.337 3 C -0.489 4.489 4 H 0.054 0.946 5 C -0.266 4.266 6 N -0.569 5.569 7 Si 0.939 3.061 8 H -0.200 1.200 9 H -0.215 1.215 10 H -0.212 1.212 11 C 0.046 3.954 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.168 4.168 15 C -0.145 4.145 16 C -0.168 4.168 17 C -0.150 4.150 18 C -0.163 4.163 19 H 0.023 0.977 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.101 -10.120 -3.956 12.003 hybrid contribution -0.169 -1.178 -0.080 1.193 sum 4.932 -11.298 -4.036 12.971 Atomic orbital electron populations 1.20877 0.85106 0.99205 0.96638 1.44176 1.00893 1.02083 1.86562 1.20020 1.11694 0.92401 1.24809 0.94625 1.27279 0.99188 1.07630 0.92490 1.70833 1.42569 1.23201 1.20309 0.82892 0.76196 0.71464 0.75580 1.20010 1.21494 1.21241 1.21305 0.96901 0.84701 0.92535 1.21963 0.98854 0.97309 0.97803 1.21778 0.93816 0.97531 1.02017 1.21814 0.96390 0.99991 0.98558 1.21652 0.99507 1.00208 0.93135 1.21815 0.96274 0.99973 0.98764 1.21777 0.93939 0.97565 1.01764 1.22016 0.98824 0.97282 0.98138 0.97748 0.95190 0.94828 0.93603 0.90005 0.93192 0.94480 0.91326 0.89918 0.93555 0.91085 0.91515 0.90049 0.93717 0.91627 0.92086 0.89401 0.96040 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.38 9.18 127.77 1.17 7.56 16 2 N -0.61 -32.03 2.46 -702.74 -1.73 -33.76 16 3 C -0.36 -20.83 9.27 84.03 0.78 -20.05 16 4 H 0.04 2.12 7.95 -2.91 -0.02 2.09 16 5 C -0.07 -3.95 4.74 84.86 0.40 -3.55 16 6 N -0.93 -57.73 12.35 21.65 0.27 -57.46 16 7 Si 1.11 52.33 29.99 68.60 2.06 54.39 16 8 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 9 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 C 0.15 6.37 2.00 45.00 0.09 6.46 16 12 C -0.12 -4.27 4.80 30.59 0.15 -4.13 16 13 C -0.11 -3.05 5.48 30.58 0.17 -2.89 16 14 C -0.13 -3.52 5.47 30.59 0.17 -3.35 16 15 C -0.11 -2.55 5.59 30.60 0.17 -2.38 16 16 C -0.13 -3.80 5.47 30.59 0.17 -3.63 16 17 C -0.11 -3.29 5.48 30.59 0.17 -3.13 16 18 C -0.12 -4.75 4.58 30.60 0.14 -4.61 16 19 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 20 H 0.03 1.37 6.85 -2.39 -0.02 1.36 16 21 H 0.03 1.87 5.83 -2.38 -0.01 1.86 16 22 H 0.25 16.18 7.41 -92.71 -0.69 15.49 16 23 H 0.08 3.61 2.58 -2.39 -0.01 3.60 16 24 H 0.05 1.73 7.82 -2.39 -0.02 1.71 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.97 4.69 -2.38 -0.01 1.96 16 28 H 0.05 1.58 5.47 -2.39 -0.01 1.57 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.59 7.47 -2.39 -0.02 1.57 16 32 H 0.04 1.65 5.47 -2.39 -0.01 1.63 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 2.19 4.69 -2.39 -0.01 2.18 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 1.83 7.14 -2.39 -0.02 1.81 16 Total: -1.00 -64.79 266.69 5.29 -59.51 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.12 Total: 11.02 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 3.57 Total: -33.70 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -1.46 Total: -91.22 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.06 Total: 54.39 kcal Total: -64.79 5.29 -59.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306446456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.836 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds