Wall clock time and date at job start Sun Mar 29 2020 21:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.53004 * 109.47084 * 240.00668 * 2 1 3 5 5 C 1.53002 * 109.46837 * 299.99474 * 4 2 1 6 6 C 1.53001 * 109.47037 * 300.00329 * 5 4 2 7 7 C 1.52994 * 109.47211 * 59.99986 * 6 5 4 8 8 C 1.52994 * 109.47241 * 299.99777 * 7 6 5 9 9 H 1.09000 * 109.47234 * 300.00144 * 8 7 6 10 10 C 1.53004 * 109.47280 * 180.02562 * 8 7 6 11 11 N 1.46501 * 109.47132 * 65.00277 * 10 8 7 12 12 C 1.46497 * 119.99708 * 270.00248 * 11 10 8 13 13 C 1.36935 * 120.00058 * 89.99907 * 11 10 8 14 14 H 1.08001 * 120.00165 * 21.71180 * 13 11 10 15 15 C 1.38819 * 119.99773 * 201.70652 * 13 11 10 16 16 N 1.31613 * 119.99906 * 11.52433 * 15 13 11 17 17 Si 1.86800 * 119.99907 * 191.51550 * 15 13 11 18 18 H 1.48500 * 109.47051 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46916 * 120.00365 * 17 15 13 20 20 H 1.48505 * 109.47310 * 240.00463 * 17 15 13 21 21 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46893 * 299.99731 * 1 2 3 23 23 H 1.08998 * 109.47137 * 59.99998 * 1 2 3 24 24 H 1.08999 * 109.47067 * 180.02562 * 4 2 1 25 25 H 1.08993 * 109.47221 * 59.99777 * 4 2 1 26 26 H 1.09000 * 109.47142 * 60.00246 * 5 4 2 27 27 H 1.09000 * 109.47028 * 180.02562 * 5 4 2 28 28 H 1.08998 * 109.47133 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47086 * 299.99951 * 6 5 4 30 30 H 1.09010 * 109.46949 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47647 * 59.99999 * 7 6 5 32 32 H 1.09007 * 109.47188 * 184.99743 * 10 8 7 33 33 H 1.08994 * 109.47181 * 305.00207 * 10 8 7 34 34 H 1.08993 * 109.47474 * 95.26549 * 12 11 10 35 35 H 1.09003 * 109.46859 * 215.26728 * 12 11 10 36 36 H 1.09002 * 109.47492 * 335.26028 * 12 11 10 37 37 H 0.97002 * 119.99658 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8849 -0.0002 7 6 1.5301 -2.1637 1.2491 8 6 2.0401 -0.7213 1.2491 9 1 3.1301 -0.7212 1.2491 10 6 1.5306 -0.0003 2.4988 11 7 2.1153 -0.6180 3.6915 12 6 1.4279 -1.7304 4.3520 13 6 3.3044 -0.1557 4.1890 14 1 3.6375 0.8436 3.9507 15 6 4.0816 -0.9716 4.9998 16 7 3.7992 -2.2525 5.1083 17 14 5.5284 -0.2514 5.9366 18 1 5.6323 1.2012 5.6464 19 1 5.3235 -0.4513 7.3937 20 1 6.7793 -0.9316 5.5147 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.1300 -0.7215 -1.2491 25 1 1.6767 -0.2073 -2.1392 26 1 0.4401 -2.1637 -1.2494 27 1 1.8937 -2.6776 -2.1392 28 1 1.6765 -3.9124 0.0001 29 1 3.1301 -2.8849 -0.0002 30 1 1.8932 -2.6779 2.1391 31 1 0.4401 -2.1638 1.2492 32 1 1.8189 1.0501 2.4552 33 1 0.4443 -0.0772 2.5452 34 1 1.8322 -2.6749 3.9880 35 1 1.5781 -1.6620 5.4294 36 1 0.3618 -1.6820 4.1300 37 1 4.3426 -2.8226 5.6746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306447803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:23 Heat of formation + Delta-G solvation = -6.121904 kcal Electronic energy + Delta-G solvation = -15123.570130 eV Core-core repulsion = 12900.417650 eV Total energy + Delta-G solvation = -2223.152480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.93938 -35.27287 -32.02269 -31.31872 -29.70153 -26.83814 -25.83331 -24.94966 -21.79995 -21.58370 -20.01110 -17.84720 -16.55223 -15.35467 -14.88477 -14.35708 -13.79221 -13.59412 -13.32745 -12.80886 -12.46670 -12.27165 -12.13333 -11.66558 -11.22226 -11.01591 -10.85074 -10.78959 -10.60607 -10.57811 -10.34148 -10.13701 -9.92201 -9.79728 -9.55240 -9.36177 -9.24159 -8.43688 -6.62615 -5.63156 -3.06818 3.42006 3.49190 3.51131 4.57667 5.11278 5.17815 5.18921 5.52007 5.58810 5.70676 5.75405 5.81400 5.83434 6.04592 6.05117 6.09555 6.18348 6.26612 6.30316 6.39892 6.50640 6.54275 6.62702 6.72606 6.77436 6.83601 6.94587 6.98073 7.24635 7.31611 7.48499 7.84375 7.91387 8.49980 9.34449 9.98992 10.47995 11.41907 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.008719 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.369201 B = 3210.606104 C = 3250.179380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.061 0.939 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.110 4.110 8 C -0.099 4.099 9 H 0.068 0.932 10 C 0.156 3.844 11 N -0.603 5.603 12 C 0.166 3.834 13 C -0.246 4.246 14 H 0.067 0.933 15 C -0.002 4.002 16 N -0.910 5.910 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.292 1.292 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.039 0.961 36 H -0.006 1.006 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 1.299 -10.186 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.147 4.147 8 C -0.121 4.121 9 H 0.086 0.914 10 C 0.029 3.971 11 N -0.325 5.325 12 C 0.021 3.979 13 C -0.376 4.376 14 H 0.085 0.915 15 C -0.199 4.199 16 N -0.556 5.556 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.537 1.181 -10.053 11.537 hybrid contribution 0.967 0.214 0.469 1.095 sum -4.571 1.395 -9.583 10.709 Atomic orbital electron populations 1.21943 0.96109 1.01701 1.00704 1.21131 0.95360 0.98870 0.95294 0.92059 1.21535 1.00362 0.95647 0.97353 1.21551 1.00485 0.95815 0.97620 1.21526 1.00668 0.98156 0.95152 1.21596 0.99159 0.96209 0.97775 1.21807 1.00796 0.95019 0.94430 0.91394 1.20921 0.95114 0.95145 0.85881 1.43961 1.22953 1.38791 1.26834 1.20826 0.89443 0.90798 0.96821 1.19260 0.96349 0.96304 1.25674 0.91525 1.24979 0.98089 0.95084 1.01785 1.70070 1.40623 1.03211 1.41710 0.86223 0.82561 0.78326 0.79700 1.20456 1.21782 1.21891 0.92321 0.92586 0.93955 0.92400 0.93062 0.92213 0.93214 0.93101 0.92441 0.90180 0.93326 0.94340 0.94528 0.95024 0.94193 0.98787 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.15 37.16 0.30 -1.72 16 2 C -0.09 -1.34 2.72 -90.62 -0.25 -1.58 16 3 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.54 5.45 -26.73 -0.15 -1.69 16 5 C -0.12 -1.59 5.65 -26.73 -0.15 -1.75 16 6 C -0.12 -1.87 5.92 -26.73 -0.16 -2.03 16 7 C -0.11 -2.02 4.50 -26.74 -0.12 -2.15 16 8 C -0.10 -1.88 2.17 -90.62 -0.20 -2.07 16 9 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 10 C 0.16 3.29 4.68 -4.04 -0.02 3.27 16 11 N -0.60 -15.38 2.75 -181.12 -0.50 -15.87 16 12 C 0.17 4.16 7.86 59.85 0.47 4.63 16 13 C -0.25 -6.88 9.68 -15.06 -0.15 -7.02 16 14 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 15 C 0.00 -0.05 5.14 -17.43 -0.09 -0.14 16 16 N -0.91 -26.81 10.55 55.49 0.59 -26.23 16 17 Si 0.90 22.29 29.57 -169.99 -5.03 17.27 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H 0.06 0.81 4.81 -51.93 -0.25 0.56 16 22 H 0.06 0.78 6.55 -51.93 -0.34 0.44 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.77 5.54 -51.92 -0.29 1.48 16 31 H 0.05 0.84 6.43 -51.93 -0.33 0.51 16 32 H 0.04 0.81 8.03 -51.92 -0.42 0.39 16 33 H 0.04 0.72 6.43 -51.93 -0.33 0.38 16 34 H 0.03 0.85 5.89 -51.93 -0.31 0.54 16 35 H 0.04 1.08 7.22 -51.93 -0.37 0.71 16 36 H -0.01 -0.14 7.83 -51.93 -0.41 -0.55 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 272.55 15.07 4.11 4.11 Total: -1.00 -28.90 272.55 -7.64 -36.54 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.31 Total: -3.55 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -0.50 Total: -12.26 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.09 Total: -42.10 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.90 -7.64 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306447803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.418 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds