Wall clock time and date at job start Sun Mar 29 2020 21:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.53004 * 109.47084 * 240.00668 * 2 1 3 5 5 C 1.53002 * 109.46837 * 299.99474 * 4 2 1 6 6 C 1.53001 * 109.47037 * 300.00329 * 5 4 2 7 7 C 1.52994 * 109.47211 * 59.99986 * 6 5 4 8 8 C 1.52994 * 109.47241 * 299.99777 * 7 6 5 9 9 H 1.09000 * 109.47234 * 300.00144 * 8 7 6 10 10 C 1.53004 * 109.47280 * 180.02562 * 8 7 6 11 11 N 1.46501 * 109.47132 * 65.00277 * 10 8 7 12 12 C 1.46497 * 119.99708 * 270.00248 * 11 10 8 13 13 C 1.36935 * 120.00058 * 89.99907 * 11 10 8 14 14 H 1.08001 * 120.00165 * 21.71180 * 13 11 10 15 15 C 1.38819 * 119.99773 * 201.70652 * 13 11 10 16 16 N 1.31613 * 119.99906 * 11.52433 * 15 13 11 17 17 Si 1.86800 * 119.99907 * 191.51550 * 15 13 11 18 18 H 1.48500 * 109.47051 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46916 * 120.00365 * 17 15 13 20 20 H 1.48505 * 109.47310 * 240.00463 * 17 15 13 21 21 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46893 * 299.99731 * 1 2 3 23 23 H 1.08998 * 109.47137 * 59.99998 * 1 2 3 24 24 H 1.08999 * 109.47067 * 180.02562 * 4 2 1 25 25 H 1.08993 * 109.47221 * 59.99777 * 4 2 1 26 26 H 1.09000 * 109.47142 * 60.00246 * 5 4 2 27 27 H 1.09000 * 109.47028 * 180.02562 * 5 4 2 28 28 H 1.08998 * 109.47133 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47086 * 299.99951 * 6 5 4 30 30 H 1.09010 * 109.46949 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47647 * 59.99999 * 7 6 5 32 32 H 1.09007 * 109.47188 * 184.99743 * 10 8 7 33 33 H 1.08994 * 109.47181 * 305.00207 * 10 8 7 34 34 H 1.08993 * 109.47474 * 95.26549 * 12 11 10 35 35 H 1.09003 * 109.46859 * 215.26728 * 12 11 10 36 36 H 1.09002 * 109.47492 * 335.26028 * 12 11 10 37 37 H 0.97002 * 119.99658 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8849 -0.0002 7 6 1.5301 -2.1637 1.2491 8 6 2.0401 -0.7213 1.2491 9 1 3.1301 -0.7212 1.2491 10 6 1.5306 -0.0003 2.4988 11 7 2.1153 -0.6180 3.6915 12 6 1.4279 -1.7304 4.3520 13 6 3.3044 -0.1557 4.1890 14 1 3.6375 0.8436 3.9507 15 6 4.0816 -0.9716 4.9998 16 7 3.7992 -2.2525 5.1083 17 14 5.5284 -0.2514 5.9366 18 1 5.6323 1.2012 5.6464 19 1 5.3235 -0.4513 7.3937 20 1 6.7793 -0.9316 5.5147 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.1300 -0.7215 -1.2491 25 1 1.6767 -0.2073 -2.1392 26 1 0.4401 -2.1637 -1.2494 27 1 1.8937 -2.6776 -2.1392 28 1 1.6765 -3.9124 0.0001 29 1 3.1301 -2.8849 -0.0002 30 1 1.8932 -2.6779 2.1391 31 1 0.4401 -2.1638 1.2492 32 1 1.8189 1.0501 2.4552 33 1 0.4443 -0.0772 2.5452 34 1 1.8322 -2.6749 3.9880 35 1 1.5781 -1.6620 5.4294 36 1 0.3618 -1.6820 4.1300 37 1 4.3426 -2.8226 5.6746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306447803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:23 Heat of formation + Delta-G solvation = -21.493548 kcal Electronic energy + Delta-G solvation = -15124.236695 eV Core-core repulsion = 12900.417650 eV Total energy + Delta-G solvation = -2223.819045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31463 -37.16191 -33.73586 -32.77873 -31.36451 -28.37578 -27.68591 -26.56889 -23.50878 -22.93596 -21.62118 -19.17215 -18.66439 -16.85298 -16.69272 -15.81334 -15.52406 -15.12026 -14.79294 -14.50304 -14.10691 -13.71062 -13.42913 -13.29282 -12.81810 -12.69978 -12.51154 -12.39491 -12.32457 -12.00831 -11.96972 -11.91149 -11.80611 -11.34081 -11.01259 -10.87013 -10.63469 -10.51913 -8.70548 -7.79558 -5.25332 1.44193 1.45143 1.55532 2.51977 3.33249 3.73555 3.87849 3.98602 4.06683 4.38468 4.43771 4.55380 4.58733 4.68902 4.72882 4.83127 4.86779 4.89393 4.97961 5.06314 5.14815 5.19928 5.25941 5.30533 5.34555 5.39411 5.46282 5.52097 5.57574 5.65256 5.74397 5.80505 5.87871 6.36854 7.19300 7.93493 8.36391 9.23804 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.008719 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.369201 B = 3210.606104 C = 3250.179380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.090 4.090 9 H 0.027 0.973 10 C 0.154 3.846 11 N -0.618 5.618 12 C 0.183 3.817 13 C -0.256 4.256 14 H 0.066 0.934 15 C -0.056 4.056 16 N -0.938 5.938 17 Si 0.965 3.035 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.294 1.294 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.024 0.976 37 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 2.164 -11.942 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.111 4.111 9 H 0.045 0.955 10 C 0.028 3.972 11 N -0.341 5.341 12 C 0.038 3.962 13 C -0.386 4.386 14 H 0.084 0.916 15 C -0.251 4.251 16 N -0.586 5.586 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.218 1.218 20 H -0.221 1.221 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.573 2.071 -11.835 13.695 hybrid contribution 1.248 -0.034 0.995 1.597 sum -5.325 2.037 -10.840 12.248 Atomic orbital electron populations 1.21905 0.94220 1.02136 1.01766 1.21080 0.96828 0.98450 0.93876 0.91986 1.21537 0.99742 0.95989 0.97495 1.21524 1.01296 0.95296 0.96692 1.21502 0.99493 0.98970 0.95400 1.21478 0.99872 0.95567 0.97225 1.21593 0.98208 0.95769 0.95544 0.95471 1.21095 0.95993 0.94850 0.85241 1.44186 1.22547 1.38813 1.28566 1.20548 0.90891 0.89961 0.94825 1.19548 0.97142 0.96354 1.25569 0.91580 1.25728 1.00836 0.95491 1.03020 1.70241 1.41679 1.04266 1.42412 0.85225 0.79225 0.78103 0.78067 1.19219 1.21783 1.22097 0.92132 0.93080 0.91432 0.93610 0.90285 0.90725 0.91232 0.92017 0.94398 0.94616 0.91770 0.94492 0.92562 0.97230 0.97103 0.95778 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.15 71.98 0.59 -2.82 16 2 C -0.08 -2.36 2.72 -10.79 -0.03 -2.39 16 3 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.11 -2.73 5.45 30.60 0.17 -2.57 16 5 C -0.11 -2.66 5.65 30.60 0.17 -2.49 16 6 C -0.12 -3.58 5.92 30.59 0.18 -3.40 16 7 C -0.10 -3.80 4.50 30.59 0.14 -3.66 16 8 C -0.09 -3.39 2.17 -10.80 -0.02 -3.41 16 9 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 10 C 0.15 6.40 4.68 86.38 0.40 6.80 16 11 N -0.62 -32.02 2.75 -726.93 -2.00 -34.02 16 12 C 0.18 9.36 7.86 127.77 1.00 10.37 16 13 C -0.26 -14.55 9.68 84.04 0.81 -13.73 16 14 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 15 C -0.06 -3.25 5.14 84.86 0.44 -2.82 16 16 N -0.94 -57.01 10.55 21.65 0.23 -56.79 16 17 Si 0.96 46.57 29.57 68.60 2.03 48.60 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 21 H 0.06 1.42 4.81 -2.39 -0.01 1.41 16 22 H 0.05 1.26 6.55 -2.39 -0.02 1.25 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.61 6.43 -2.39 -0.02 1.60 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.62 5.54 -2.38 -0.01 1.61 16 31 H 0.06 2.12 6.43 -2.39 -0.02 2.10 16 32 H 0.04 1.53 8.03 -2.38 -0.02 1.51 16 33 H 0.06 2.11 6.43 -2.39 -0.02 2.10 16 34 H 0.01 0.53 5.89 -2.39 -0.01 0.52 16 35 H 0.01 0.58 7.22 -2.39 -0.02 0.56 16 36 H 0.02 1.05 7.83 -2.39 -0.02 1.04 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -63.23 272.55 5.12 -58.11 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.02 Total: 4.21 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.85 Total: -20.12 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -1.77 Total: -90.81 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -63.23 5.12 -58.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306447803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.617 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds