Wall clock time and date at job start Sun Mar 29 2020 21:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.90464 * 2 1 4 4 C 1.54903 * 110.99106 * 236.13141 * 2 1 3 5 5 N 1.47840 * 104.79755 * 204.83958 * 4 2 1 6 6 C 1.46900 * 111.00176 * 146.36587 * 5 4 2 7 7 C 1.53002 * 109.47341 * 66.64038 * 6 5 4 8 8 C 1.50694 * 109.47393 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00258 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00128 * 180.27430 * 8 7 6 11 11 N 1.31516 * 120.00181 * 359.72319 * 10 8 7 12 12 Si 1.86803 * 119.99988 * 179.72661 * 10 8 7 13 13 H 1.48500 * 109.47268 * 90.00311 * 12 10 8 14 14 H 1.48503 * 109.46915 * 209.99834 * 12 10 8 15 15 H 1.48497 * 109.47047 * 329.99887 * 12 10 8 16 16 C 1.47440 * 108.56970 * 24.09516 * 5 4 2 17 17 C 1.53004 * 109.88880 * 118.41468 * 16 5 4 18 18 C 1.52996 * 109.89370 * 239.60522 * 16 5 4 19 19 C 1.54316 * 107.23118 * 359.01502 * 16 5 4 20 20 H 1.09007 * 109.47473 * 182.41486 * 1 2 3 21 21 H 1.09005 * 109.47409 * 302.41152 * 1 2 3 22 22 H 1.09002 * 109.47082 * 62.41469 * 1 2 3 23 23 H 1.09001 * 110.37250 * 86.01118 * 4 2 1 24 24 H 1.08997 * 110.46961 * 323.71587 * 4 2 1 25 25 H 1.08996 * 109.47453 * 306.64018 * 6 5 4 26 26 H 1.09007 * 109.47477 * 186.63851 * 6 5 4 27 27 H 1.09003 * 109.47161 * 60.00198 * 7 6 5 28 28 H 1.09007 * 109.46682 * 300.00300 * 7 6 5 29 29 H 0.96999 * 120.00258 * 180.02562 * 11 10 8 30 30 H 1.08998 * 109.46949 * 64.72686 * 17 16 5 31 31 H 1.09000 * 109.47272 * 184.72619 * 17 16 5 32 32 H 1.09001 * 109.47311 * 304.72947 * 17 16 5 33 33 H 1.08999 * 109.46936 * 59.99549 * 18 16 5 34 34 H 1.08997 * 109.47440 * 179.97438 * 18 16 5 35 35 H 1.09002 * 109.47055 * 300.00385 * 18 16 5 36 36 H 1.09001 * 110.70512 * 219.33184 * 19 16 5 37 37 H 1.08998 * 110.70861 * 96.09672 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0848 -0.8060 -1.2008 5 7 3.4312 -1.2420 -0.7731 6 6 3.7611 -2.5589 -1.3343 7 6 3.8948 -2.4466 -2.8543 8 6 4.2326 -3.7976 -3.4301 9 1 4.3407 -4.6512 -2.7773 10 6 4.4087 -3.9430 -4.7899 11 7 4.2765 -2.9038 -5.5850 12 14 4.8350 -5.6162 -5.5028 13 1 3.5850 -6.3446 -5.8378 14 1 5.6485 -5.4377 -6.7322 15 1 5.6103 -6.3964 -4.5051 16 6 3.4692 -1.2711 0.7005 17 6 3.7484 -2.6950 1.1860 18 6 4.5540 -0.3213 1.2122 19 6 2.0857 -0.8072 1.2027 20 1 -0.3634 -1.0268 0.0433 21 1 -0.3634 0.5508 0.8676 22 1 -0.3633 0.4759 -0.9109 23 1 2.1544 -0.1712 -2.0842 24 1 1.4529 -1.6704 -1.4044 25 1 2.9687 -3.2666 -1.0906 26 1 4.7031 -2.9085 -0.9116 27 1 4.6872 -1.7389 -3.0981 28 1 2.9527 -2.0971 -3.2770 29 1 4.4001 -3.0062 -6.5416 30 1 4.7447 -2.9994 0.8652 31 1 3.6920 -2.7255 2.2741 32 1 3.0076 -3.3745 0.7645 33 1 4.3359 0.6930 0.8780 34 1 4.5759 -0.3478 2.3016 35 1 5.5229 -0.6321 0.8213 36 1 2.1884 -0.1693 2.0805 37 1 1.4475 -1.6637 1.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306455246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:49 Heat of formation + Delta-G solvation = -15.422447 kcal Electronic energy + Delta-G solvation = -14727.582295 eV Core-core repulsion = 12504.026513 eV Total energy + Delta-G solvation = -2223.555782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.54970 -34.04917 -33.16336 -31.91607 -28.88870 -27.29803 -26.51774 -24.76369 -23.58918 -20.65613 -19.88824 -18.21475 -16.31970 -15.57227 -14.85368 -14.42988 -14.34995 -13.53667 -13.46185 -12.90287 -12.54061 -12.42351 -12.16838 -12.02655 -11.68828 -11.39756 -11.24529 -11.05158 -10.91770 -10.74688 -10.47059 -10.41232 -10.27644 -10.07113 -9.70962 -9.25342 -9.05921 -8.29938 -7.58606 -5.95577 -3.97809 3.33847 3.39980 3.43381 4.40523 4.55230 4.82696 4.91020 5.11067 5.37343 5.40188 5.48522 5.56968 5.69498 5.76980 5.84785 5.91697 5.97602 6.03709 6.10810 6.14921 6.21116 6.23963 6.35614 6.38506 6.51138 6.55336 6.59731 6.75002 7.07780 7.63182 7.66426 7.86355 7.96359 8.15152 8.49246 9.09914 9.65541 11.15824 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.007469 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.340819 B = 3747.746661 C = 4073.473714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.079 0.921 4 C 0.054 3.946 5 N -0.522 5.522 6 C 0.058 3.942 7 C 0.028 3.972 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.090 3.910 17 C -0.161 4.161 18 C -0.123 4.123 19 C -0.126 4.126 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 4.634 13.062 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.097 0.903 4 C -0.074 4.074 5 N -0.246 5.246 6 C -0.069 4.069 7 C -0.010 4.010 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.000 4.000 17 C -0.219 4.219 18 C -0.181 4.181 19 C -0.165 4.165 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.255 5.021 12.684 14.289 hybrid contribution -0.346 -1.541 -0.273 1.603 sum -4.601 3.480 12.411 13.686 Atomic orbital electron populations 1.21703 0.94951 1.01667 1.01420 1.22308 0.95107 0.99579 0.95381 0.90303 1.23024 0.89071 0.98145 0.97154 1.63661 1.26379 1.29374 1.05152 1.22551 0.98635 0.86707 0.98976 1.19081 0.97466 0.96793 0.87627 1.21211 1.47681 0.94923 0.92139 0.92891 1.24993 0.95560 0.96518 0.97252 1.69977 1.50028 1.29356 1.03893 0.86619 0.78373 0.84491 0.78649 1.20752 1.21204 1.19913 1.21735 0.94522 0.94613 0.89120 1.22351 1.02655 0.96733 1.00142 1.21716 0.98585 0.99211 0.98636 1.22930 0.96207 0.99464 0.97872 0.92796 0.92956 0.92472 0.90529 0.93682 0.96084 0.91846 0.95892 0.96744 0.93062 0.91665 0.93129 0.92284 0.92641 0.93429 0.92453 0.91470 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.29 37.16 0.35 -1.28 16 2 C -0.10 -1.44 3.63 -88.48 -0.32 -1.76 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.05 0.95 5.12 -2.30 -0.01 0.93 16 5 N -0.52 -9.86 4.81 -215.76 -1.04 -10.90 16 6 C 0.06 1.27 3.61 -3.82 -0.01 1.25 16 7 C 0.03 0.74 4.98 -27.89 -0.14 0.61 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 9 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 12 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.09 1.38 1.15 -130.62 -0.15 1.23 16 17 C -0.16 -2.37 7.15 37.16 0.27 -2.11 16 18 C -0.12 -1.72 8.71 37.16 0.32 -1.39 16 19 C -0.13 -1.67 5.48 -24.91 -0.14 -1.81 16 20 H 0.05 0.64 8.11 -51.92 -0.42 0.21 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 24 H 0.04 0.84 7.56 -51.93 -0.39 0.44 16 25 H 0.02 0.46 6.65 -51.93 -0.35 0.11 16 26 H 0.06 1.38 6.33 -51.92 -0.33 1.05 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.01 0.40 7.40 -51.92 -0.38 0.02 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.06 1.01 6.68 -51.93 -0.35 0.67 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.92 6.64 -51.93 -0.34 0.58 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 37 H 0.06 0.84 7.72 -51.93 -0.40 0.44 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -30.18 286.91 -7.97 -38.14 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.72 Total: -3.80 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.25 Total: -18.11 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.30 Total: -37.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.18 -7.97 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306455246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.720 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds